RNA id: unassigned_transcript_937


Basic Information

Item Value
RNA id unassigned_transcript_937
length 81
RNA type tRNA
GC content 0.59
exon number 1
gene id trnas-uga_115
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27073230 ~ 27073310 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggggtctcccgcgcaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46387 lncRNA upstream 79876 26993034 ~ 26993354 (+) True G31427
XR_006250602.1 lncRNA upstream 138879 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 171225 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 204759 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 293624 26779293 ~ 26779606 (+) True G31420
TU46388 lncRNA downstream 11007 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 124577 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 159786 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 224226 27297536 ~ 27369182 (+) False LOC122342372
TU46414 lncRNA downstream 287533 27360843 ~ 27406082 (+) False LOC122342806
XM_043236148.1 mRNA upstream 66924 27004701 ~ 27006306 (+) True LOC122342369
XM_043236145.1 mRNA upstream 306057 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 645991 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 895612 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 1095607 25974877 ~ 25977623 (+) True LOC122342357
XM_043236149.1 mRNA downstream 134426 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 283502 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 290708 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 317029 27390339 ~ 27406088 (+) True LOC122342806
XM_043236927.1 mRNA downstream 317029 27390339 ~ 27406088 (+) False LOC122342806
unassigned_transcript_936 other upstream 2567 27070583 ~ 27070663 (+) True trnas-uga_114
unassigned_transcript_935 other upstream 2909 27070241 ~ 27070321 (+) True trnas-aga_113
unassigned_transcript_934 other upstream 5556 27067593 ~ 27067674 (+) True trnas-aga_112
unassigned_transcript_933 other upstream 7854 27065295 ~ 27065376 (+) True trnas-uga_113
unassigned_transcript_932 other upstream 10486 27062664 ~ 27062744 (+) True trnas-uga_112
unassigned_transcript_938 other downstream 2218 27075528 ~ 27075607 (+) True trnas-aga_114
unassigned_transcript_939 other downstream 2564 27075874 ~ 27075955 (+) True trnas-uga_116
unassigned_transcript_940 other downstream 4059 27077369 ~ 27077440 (+) True trnak-uuu_103
unassigned_transcript_941 other downstream 4589 27077899 ~ 27077980 (+) True trnas-uga_117
unassigned_transcript_942 other downstream 5584 27078894 ~ 27078975 (+) True trnas-aga_115