RNA id: unassigned_transcript_953


Basic Information

Item Value
RNA id unassigned_transcript_953
length 73
RNA type tRNA
GC content 0.47
exon number 1
gene id trnav-uac_5
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27223914 ~ 27223986 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTtgtgtagtgtagtggtcatcatgTTTGACTtacacgcgaaaggtcctcggttcgaaaccgagcagaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46389 lncRNA upstream 25648 27197887 ~ 27198266 (+) True G31429
TU46388 lncRNA upstream 139207 27084317 ~ 27084707 (+) True G31428
TU46387 lncRNA upstream 230560 26993034 ~ 26993354 (+) True G31427
XR_006250602.1 lncRNA upstream 289563 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 321909 26901712 ~ 26902005 (+) True G31424
TU46401 lncRNA downstream 9110 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 73550 27297536 ~ 27369182 (+) False LOC122342372
TU46414 lncRNA downstream 136857 27360843 ~ 27406082 (+) False LOC122342806
TU46415 lncRNA downstream 136857 27360843 ~ 27406082 (+) False LOC122342806
TU46428 lncRNA downstream 139602 27363588 ~ 27410595 (+) False G31443
XM_043236149.1 mRNA upstream 13312 27207736 ~ 27210602 (+) True LOC122342370
XM_043236148.1 mRNA upstream 217608 27004701 ~ 27006306 (+) True LOC122342369
XM_043236145.1 mRNA upstream 456741 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 796675 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 1046296 26173194 ~ 26177618 (+) True LOC122342360
XM_043236327.1 mRNA downstream 132826 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 140032 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 166353 27390339 ~ 27406088 (+) True LOC122342806
XM_043236927.1 mRNA downstream 166353 27390339 ~ 27406088 (+) False LOC122342806
XM_043236924.1 mRNA downstream 166353 27390339 ~ 27406088 (+) False LOC122342806
unassigned_transcript_952 other upstream 82290 27141552 ~ 27141624 (+) True trnav-aac_9
unassigned_transcript_951 other upstream 84788 27139054 ~ 27139126 (+) True trnav-cac_2
unassigned_transcript_950 other upstream 86006 27137836 ~ 27137908 (+) True trnav-aac_8
unassigned_transcript_949 other upstream 86888 27136954 ~ 27137026 (+) True trnav-aac_7
unassigned_transcript_948 other upstream 87966 27135876 ~ 27135948 (+) True trnav-aac_6
TU46406 other downstream 133457 27357443 ~ 27358147 (+) False LOC122342494
TU46402 other downstream 142244 27366230 ~ 27367990 (+) False LOC122342372
TU46403 other downstream 142365 27366351 ~ 27367990 (+) False LOC122342372
TU46683 other downstream 982972 28206958 ~ 28216248 (+) True G31614
TU46688 other downstream 994747 28218733 ~ 28221417 (+) True G31619