RNA id: TU47337


Basic Information

Item Value
RNA id TU47337
length 2227
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G32086
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 162490 ~ 204536 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATATAAGactcatttttaatcttttaatttttgctttCCAAAGGTCAGTGACATTTTATGAATTTGGCATTATCCGTACAACATGTGAAGCACCTTTTTAGTTTTATGAATGCATCTTTGTGTTTCACACCTGATGAATATGGGACATTAGCGTGATAATACTTCCAGTATAAACTCAACTATGAATCTAATCATAGATGCATTTGTCCAAAATGATGATGTGTCTTGTCTAGAGATTATGGTTTTAAAGTGACCACAGTGCCTCTGTagctaattttttattttttattttttttggtttcccGCAAAGAACAGCACCTTCTTCCAGAACGGTTTCCTTTTATTATGGGCCCACATGGACCACAGGGTAAATTACTTTAACTGGCCTTGCTGATGTTAGAAGAGCCTGCTATTCCTTTTGACTGGACTTTTGTCAATCTAGCATACAGATATACGAGAGCCGTGTATCCAATGTTACTGTGAAGGCCTTTTTTGAGCACTGTGCATATCGCTAGTCCTCCAAAACCTTGTGCAGCAGTCAGAAAGACGACGTAAAACGCTTGTCACTACAGTGAGAATGGATGATGAAAGTCGACATGAAATCAAAAGCAACCCTGTTTACTTTCTTCATACGTGTTGTGatgctttatttcaattttaataggAAACTAAACGGCTATATTGCACCATCCATCCGTTTAATGGATGAAATCGAGCCcatacttacattttatttgtgttcagtATTTTGTTTCACTCTGAACCATGATAATGTGAAAGTAAAATGGGTCGCTATGCAGTTTCATGTAGACTTTGATGAGCATCAGATAGCATTCATTAAACTCTTAATGTGCCGTGTGATTGAAAGGGCATTAGAGCATTGAACATTAAGAGTGAGATTGTAAAGAAACATGAGAGAGGTCAGCATCTACTGTTGCTTAAGCTTTAAACACTACTgtgaaagattttattttgtttaaataattagttactaatatgccatttttttttttccagttatgTGTAGAGATCTTTAAAGAAGCCtactaatgtttatttttttatttgcttgtatGAATGTATAATACACAAGTCAATGTGTAtgcaatgtatttgttttttaactgtTGAAGAATATGCTTTTGAAAGCCTTAGCTTTGGATTATGGATTTTATAGCTGAGATGAGCATGTTATTAGGAGTATAAATGGAAAATGTTATAGACTGTTTTAGTAGAGGGCGGGGAAAGTGGGCCAAATCTGATCATTATTgttaaaacagacagacagagagacagagagagacacagacagagagacagagagagacacagacagagagagacacagacagacacaaaatgTCTGAGCAGGGCATTTCATTTTTCTAAATCAGATTTGAGCAACTTCTGTATGCAATTAAGATCCGATATCAGTAAGATTGTACACTACATGTATGAGGcgttaatgtaaacattttaacactgaTGTAAATAAGCTTTTCTCTTTAAGCATGAAGATCATCAGATGGGAATATTGCACCccagttaatattaaaataatattgccTTTGTATGCATGACAGGTTCCACATTCAGCATTCAGAGAGAGGAAGATGTGAACTATGAATGAGGAATATGAAATAATTCCATATAGCactaaatgagtgtgtgtgtaaacacgtGTAGAAAAAATCAAGATGTATGCAGGCATCTGAGCTTCTATTACACTATTGCTAATACACTAACAGAGTATCAACCAGTCTGTATTATTATAGACAATAAATCCTGTAAAACAAAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatacttcaaattaggcttttaatgaaaatgtgacccttttctttcccttttcaGCCACATGATAATGATCCTTCAGTGAACCGTCTATGTGCTGTATGCTGTTTTGGCTTCATCTAGAAGCAAAGGGGCAATGGAAGATAAAGGAgaacacgcacacgcacacacacacacacgcacacaaaagaCTTTACAGAAAGACAGAAGCGTTAAAGCTCACTGGACACTTCAGGAAGAGTGTGAATATTAAAAAGTGCAAACAGTTTCCCTTCATTGTTCTCCTTGCTCTCAAACGTCATCAAAGATGCGTGCACGAGAAGCAGAGGTCGAGAGGTAATGTCCTCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47357 lncRNA downstream 136598 25514 ~ 25892 (-) True G32102
TU47355 lncRNA downstream 144975 16470 ~ 17515 (-) True G32100
TU47354 lncRNA downstream 147185 12703 ~ 15305 (-) True G32099
TU47353 lncRNA downstream 150621 11445 ~ 11869 (-) True G32098
TU47352 lncRNA downstream 151439 10253 ~ 11051 (-) True G32097
TU47414 lncRNA upstream 146431 350967 ~ 352079 (-) True G32150
TU47396 lncRNA upstream 177516 382052 ~ 384236 (-) False kcnv2b
TU47450 lncRNA upstream 227094 431630 ~ 431890 (-) True G32177
TU47471 lncRNA upstream 251581 456117 ~ 482271 (-) True G32186
TU47475 lncRNA upstream 253944 458480 ~ 465004 (-) False G32187
XM_043240864.1 mRNA downstream 81427 76028 ~ 81063 (-) True LOC122346175
XM_043240216.1 mRNA upstream 566 205102 ~ 222554 (-) True lifra
XM_043240630.1 mRNA upstream 35415 239951 ~ 261671 (-) True rictora
XM_043238360.1 mRNA upstream 57832 262368 ~ 272815 (-) False LOC122344789
XM_043238361.1 mRNA upstream 57832 262368 ~ 272452 (-) True LOC122344789
XM_043238657.1 mRNA upstream 68632 273168 ~ 278284 (-) False c5h5orf34
TU47359 other downstream 126142 35777 ~ 36348 (-) True G32104
TU47358 other downstream 127773 33779 ~ 34717 (-) True G32103
TU47356 other downstream 138541 20139 ~ 23949 (-) True G32101
TU47390 other upstream 42407 246943 ~ 249755 (-) False rictora
XR_006251108.1 other upstream 1108068 1312604 ~ 1336184 (-) True castor1
XR_006251110.1 other upstream 1108070 1312606 ~ 1336184 (-) False castor1
XR_006251109.1 other upstream 1108070 1312606 ~ 1336184 (-) False castor1
XR_006251111.1 other upstream 1117760 1322296 ~ 1336187 (-) False castor1

Expression Profile