RNA id: TU47396


Basic Information

Item Value
RNA id TU47396
length 1282
lncRNA type sense_over
GC content 0.39
exon number 4
gene id kcnv2b
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 382052 ~ 387878 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCTCATAAGCGTCACTTCCTCGCGTCGCGCGCTCGCGTTTCTCTGACCTCTGAAAGACGGAGCGCGGTGCTGAAGCCCAGCGAAATGGCTCCTCCAGTGCAAGTGTCGCCGCTGATTAAGacagCCAGGTGGTCTGCTTTGCTTATTGGCGTTATCTACGGAAAGCGCAGATATGATCATCTGAAACCGATtgcagaggaggagaggagaatagaagaggaggagaagaaggtACGAGAGGAGAAGGAACGCATTGCTAAACAGCTAGCAGAAGcTAGTGAGGACACAATCTTAAAGTGAGCTGCCCGAAACGACACCCGCATCACTCATGTTGTAAAGATCGTGTTACCTGTCTGGATAAAGAATGATGCTTGTATTTTGCCACTTTGGTTTTACAGTGCCCTTTCACTTCTCATGTTAGATTAATGCCGCATTTGTGAAATAACTCAATACATGCaaatatgtgtataaatttCTTCTGATCTGACACTTTATTCTTTCATTGCCTGTGCTCATTACATCTTCAATGTTAAACATGCACTGAATCAGAGTTCCACTTTGGTAAACATCCACaccaatatttattaataaactgttaatccctatttctttttcattttgatttagaaataattttcatGTCCAGGCAGTTCAAAATCACAGCAAAATTGATTTTTTCAGTCAGTGCAAGGAAATGCTAAAAATCTTCAGGTTGTTGTAGAGAAACTCATGCAATCTATTTTTATCTCACATAAAAATTTACCAATGGATTGTCATGAATATTGAAAAATGATATGcagacatttttttcaaaacaaaaccgtATTTTCAAGGTAAATGACTGCAGCATCAGATAAACAACCTTAAATGGCATGTAAAAACCAGATGAACTGTTTGGACACTTTACATGTTATTCAAACCAGTCTCATCCTGTTCTGGtgaatgtttttgatcaaattaagaCGCAAATCATATCGCATGTGGACAGTCAAAATTCTGTCTAATCGAGACTAATAGTTCTCTGAATATTTCTCAGTGACTGAATATTCTCCATTTCTTCCCCAGTAGTCCACGGCTCTGACTCTATAATAACCACTCGCCTCCAGACTCTCTgtggagagaaaaacaaaagcaggtCAATGCCGATCAGCGCTTGAAGTTAAATATTCTGAATCTAGTAATACCTGAAGAATAAGTGTAGTATGTGAAAATAGTGTCTCTCTGGTTAATCCTCTGGAAAGTGGTCTCATCTTTGGAAAATTCCACTTCATAAGTTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47414 lncRNA downstream 29973 350967 ~ 352079 (-) True G32150
TU47337 lncRNA downstream 177516 162490 ~ 204536 (-) True G32086
TU47339 lncRNA downstream 177516 162490 ~ 204536 (-) False G32086
TU47357 lncRNA downstream 356160 25514 ~ 25892 (-) True G32102
TU47355 lncRNA downstream 364537 16470 ~ 17515 (-) True G32100
TU47450 lncRNA upstream 47394 431630 ~ 431890 (-) True G32177
TU47471 lncRNA upstream 71881 456117 ~ 482271 (-) True G32186
TU47475 lncRNA upstream 74244 458480 ~ 465004 (-) False G32187
TU47477 lncRNA upstream 79778 464014 ~ 479881 (-) True G32187
TU47481 lncRNA upstream 80828 465064 ~ 470468 (-) True G32191
XM_043240377.1 mRNA downstream 9234 371671 ~ 372818 (-) False LOC122345880
XM_043240376.1 mRNA downstream 9234 371671 ~ 372818 (-) True LOC122345880
XM_043240367.1 mRNA downstream 42321 316841 ~ 339731 (-) True adamts12
XM_043238651.1 mRNA downstream 69024 301638 ~ 313028 (-) True fgf10b
XM_043238853.1 mRNA downstream 82671 287133 ~ 299381 (-) True mybbp1a
XM_043240769.1 mRNA upstream 14183 398419 ~ 399683 (-) True si:ch211-12e13.10
XM_043240768.1 mRNA upstream 15756 399992 ~ 411093 (-) False lrp13
XM_043240767.1 mRNA upstream 15756 399992 ~ 411093 (-) True lrp13
XM_043239490.1 mRNA upstream 102808 487044 ~ 511879 (-) False gak
XM_043239489.1 mRNA upstream 102808 487044 ~ 511879 (-) True gak
TU47390 other downstream 132297 246943 ~ 249755 (-) False rictora
TU47359 other downstream 345704 35777 ~ 36348 (-) True G32104
TU47358 other downstream 347335 33779 ~ 34717 (-) True G32103
TU47356 other downstream 358103 20139 ~ 23949 (-) True G32101
XR_006251108.1 other upstream 928368 1312604 ~ 1336184 (-) True castor1
XR_006251110.1 other upstream 928370 1312606 ~ 1336184 (-) False castor1
XR_006251109.1 other upstream 928370 1312606 ~ 1336184 (-) False castor1
XR_006251111.1 other upstream 938060 1322296 ~ 1336187 (-) False castor1
XR_006250937.1 other upstream 958370 1342606 ~ 1354414 (-) False lrrc74b

Expression Profile