RNA id: TU47584


Basic Information

Item Value
RNA id TU47584
length 1961
RNA type TUCP
GC content 0.39
exon number 1
gene id G32277
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1055193 ~ 1057153 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggttatatattaatgtatcaGATagctatataaatatgaataagatGTACTGGTAATAATGATtggataaataatttataacaaaCGCTACAATATTCAATAAACCGATCCGACTAGTTTTGAGTATGTCGAGTGTTGACTGCGCAATTTAGTTCGTAGGCATTTTGTGTGCCGTTAATGAGGATCGGTGACAGCTAAAATACTGCTCACTTATATTGACAAAGAGGTGTGCAAGCAAACTACATCTCACATCACTCTCTTGGATGGAATGgtaatgctaaaatataaagaaaaacaccaaTTACGCACCAAATGTCCATGCTTTGCTCTTTATTATGTTGCATTAAGCCTAAAAAAGCTTAATGTCTACTTTACGTCAAGAAAAACGAACAGGGTGAATTATCCAGTAAAACGCATCACATATAACGCTTCTCTTATTGTTAGCTAAAACTAATACTATTAAGAATCGTGGTAACACTTTACGGTAAGGTTCCATTAGTTAGTCTTAGCTTTTTAGTCCAGATTGTATACATGTTATTTACTAGTAATATGCTGATTCATTTATAGACATCGTATTGGCGCAGATTCAACGTGCTTGCTATTTAAGATGGCGTTTAATAATGACAAATCGAATCTGTTTCCAAGCAAATGGTCTGCACCTCAAGACATCACGAAGCGACACCATTAATGGAGTCTGTGGTCAgaccattcatttatttttggtctCGACTGATTCTGAGAGTCTATCCTCTCCAATTAGCTCTGGCTGCCGATCAGCAAGAGAAAACCCACACTGCCTTTTACGTTTCAGGGCTTCcacgaaaaaaaacaaagcagcgCACCCCCATTACACCGACTCACGCCTGCGCTCTTCCTCGCGCTTTCTTGTTATCCTTCTTCATCGGGGAGCTGGATCCATCACGTTCAAAGTGAAAGAGGGCACCCATCAAATTATGGAGACGAATGCCCTGTTTGCGATGCATTATAcatgcagaaagaaagagagaggaaaacaggCAGGGAAAGGAAAGACGTACCGTCCGTTATGAAAACGCGCACCTTTGTTTCAGTATTCCAGGAATCCCTCCGTGTACCTGCCGGTGAAATCAAATTAGGAGAAGACCTGCAAGGCCCCTGTCAAAGCGCAACAAAAGGTAATTAATTCCACAGTTAAAGCTCAAATGCAGCTTCAAACTCTTCTGTCAATGTTACGCCCGCAGCCCGCGATAATTGTCATTAAATTTATTCTTGGTTAACAGTCAGCCGATACCTTCACTTACATCTGCCAGTCAGCGTTTCAAATGGTGACTAACTAAAAGTTaagaaactaataaaagtaCTGAAGGACTTTGTAAACACCTCATCTGCCATTGGTCGATTCAACAGACAGCCCCTCCCACAAACTAACGGTTGCTTGGCAACACAGTCACCATGTTTGCATATATAGCTTCTGTAATCTAattatctaattaaaataagtacTGAAGAGTATGCAATCAGCCTATGCTTATTTCCGTATCGCCCCCTGGAGGGCATAATGAAGCCGGTCATTTCTACTCAGTTAAGTAGTAATGTAGTAAAACGCATGAGGcgagtaattaattacataatttacatttcgGGGTGCTCTGCTCAACAACACGTAGTCTGAGTTTGATCTCGTTTCTATATGCCGAGacattttgaattatatttcacaaaattgtcAACAATCAAGATTGTCATATCTGTGACAGCAGCACAGAACATCAGCACAAAGGATTGATTTATACCAACATGGGGTCTTTGAATACGCCCAATAACACACGCCTCCAGctcttaaaatatgaataacagATTATGAGTGAAAAAATATCGCCTCAGATAGGATGAAACCCAAACAATTCTATCTCGCTTTCCTTTCTTTATACTGTGTGCATCTGTACACTGTAATCTACATATAAAGTGAGTGCCATATTTAt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47588 lncRNA upstream 4579 1050389 ~ 1050614 (+) True G32281
TU47587 lncRNA upstream 4841 1050108 ~ 1050352 (+) True G32280
TU47542 lncRNA upstream 351005 703765 ~ 704188 (+) True G32237
TU47539 lncRNA upstream 354852 700105 ~ 700341 (+) True G32234
XR_006251037.1 lncRNA upstream 365157 679630 ~ 690036 (+) True LOC122345815
TU47651 lncRNA downstream 232147 1289300 ~ 1293600 (+) True LOC122346206
TU47652 lncRNA downstream 232147 1289300 ~ 1293600 (+) False LOC122346206
TU47654 lncRNA downstream 232147 1289300 ~ 1293600 (+) False LOC122346206
XR_006251112.1 lncRNA downstream 232192 1289345 ~ 1291774 (+) False LOC122346206
TU47667 lncRNA downstream 242098 1299251 ~ 1301855 (+) True G32344
XM_043238438.1 mRNA upstream 389322 661601 ~ 665871 (+) True hscb
XM_043238685.1 mRNA upstream 408562 644255 ~ 646631 (+) True LOC122344993
XM_043238325.1 mRNA upstream 411176 642273 ~ 644017 (+) True LOC122344762
XM_043240834.1 mRNA upstream 413366 632469 ~ 641827 (+) False slc2a11b
XM_043240833.1 mRNA upstream 413366 632634 ~ 641827 (+) True slc2a11b
XM_043238982.1 mRNA downstream 19309 1076462 ~ 1101483 (+) True scarf2
XM_043240122.1 mRNA downstream 55111 1112264 ~ 1115251 (+) True selenoe
XM_043240121.1 mRNA downstream 58986 1116139 ~ 1119635 (+) True zgc:112294
XM_043240490.1 mRNA downstream 199919 1257072 ~ 1264944 (+) False fbxo21
XM_043240489.1 mRNA downstream 199920 1257073 ~ 1264944 (+) True fbxo21
TU47246 other upstream 603828 450192 ~ 451365 (+) False tal2
XR_006251007.1 other upstream 623728 419246 ~ 431465 (+) True susd1
XR_006251006.1 other upstream 623728 419246 ~ 431465 (+) False susd1
TU47222 other upstream 647532 402573 ~ 407661 (+) True G32004
TU47217 other upstream 660734 392551 ~ 394459 (+) False rchy1
TU47619 other downstream 55343 1112496 ~ 1115405 (+) False selenoe
TU47965 other downstream 734707 1791860 ~ 1793243 (+) False ccl19a.2
TU48046 other downstream 765501 1822654 ~ 1826114 (+) True G32611
TU48056 other downstream 777995 1835148 ~ 1843013 (+) True G32620
TU48080 other downstream 844305 1901458 ~ 1905288 (+) False LOC122346050

Expression Profile