RNA id: TU47956


Basic Information

Item Value
RNA id TU47956
length 408
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G32539
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1761564 ~ 1761971 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaagaggaaagaaaaagtaACCTTCACCCCTCCCCTAAGCTTTCAAGTTCTCCCACCCAGCGTGCATTCGTCTGCATTTCGTTTGGCGTAACAACAGGTGTAATGAATCGACTCCATAAAGACGTGTTATGACGTCAAAATGGCGTTGCTGCTCAAATCCAGAATCACAAGGCGACGGATGCGGACGCGCTCGAGTTAAATAGCGCGGAGCTTAATGCGTAGAAATGGCCAATTAAAAGAAAGACGCGCAGCtaaattttatttcactggCTTCAAGCGTACCCGTTTGTTTCATTTAAGCCTCTGTTTTAATTCGGTCGGCCAAGCGCAACCACGAACGGCGATTTCGCCCCTTTGCGTTGAAGGCCCGTTCAAAGGTGGCCCGTGCATTTCGGCTGTGCTAAGG

Function

GO:

id name namespace
GO:0048731 system development biological_process

KEGG:

id description
ko04340 Hedgehog signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47955 lncRNA upstream 1334 1759994 ~ 1760230 (+) True G32538
TU47922 lncRNA upstream 54677 1705974 ~ 1706887 (+) True G32513
XR_006251038.1 lncRNA upstream 63890 1690109 ~ 1697674 (+) True LOC122345819
TU47909 lncRNA upstream 87208 1673029 ~ 1674356 (+) True G32504
TU47902 lncRNA upstream 107665 1653433 ~ 1653899 (+) True G32499
TU47957 lncRNA downstream 34 1762005 ~ 1762282 (+) True G32540
XR_006251105.1 lncRNA downstream 950 1762921 ~ 1765407 (+) True LOC122346170
TU47959 lncRNA downstream 4625 1766596 ~ 1766890 (+) True G32542
TU47971 lncRNA downstream 23430 1785401 ~ 1785642 (+) True G32552
TU48082 lncRNA downstream 139487 1901458 ~ 1905499 (+) True LOC122346050
XM_043238200.1 mRNA upstream 16393 1743315 ~ 1745171 (+) True LOC122344671
XM_043239928.1 mRNA upstream 109148 1623097 ~ 1652416 (+) True ppil2
XM_043239929.1 mRNA upstream 139237 1616062 ~ 1622327 (+) True gal3st1a
XM_043240467.1 mRNA upstream 149016 1603813 ~ 1612548 (+) True pes
XM_043240652.1 mRNA upstream 163836 1579923 ~ 1597728 (+) True pole
XM_043239639.1 mRNA downstream 11994 1773965 ~ 1779426 (+) False ydjc
XM_043239638.1 mRNA downstream 12268 1774239 ~ 1779426 (+) True ydjc
XM_043240536.1 mRNA downstream 29857 1791828 ~ 1793266 (+) True ccl19a.2
XM_043240535.1 mRNA downstream 32563 1794534 ~ 1796438 (+) True ccl19a.1
XM_043240534.1 mRNA downstream 34863 1796834 ~ 1806041 (+) True tctn2
TU47619 other upstream 646159 1112496 ~ 1115405 (+) False selenoe
TU47584 other upstream 704411 1055193 ~ 1057153 (+) True G32277
TU47246 other upstream 1310199 450192 ~ 451365 (+) False tal2
XR_006251007.1 other upstream 1330099 419246 ~ 431465 (+) True susd1
TU47965 other downstream 29889 1791860 ~ 1793243 (+) False ccl19a.2
TU48046 other downstream 60683 1822654 ~ 1826114 (+) True G32611
TU48056 other downstream 73177 1835148 ~ 1843013 (+) True G32620
TU48080 other downstream 139487 1901458 ~ 1905288 (+) False LOC122346050
TU48087 other downstream 248440 2010411 ~ 2018459 (+) False LOC122345711

Expression Profile