RNA id: TU47971


Basic Information

Item Value
RNA id TU47971
length 242
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G32552
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1785401 ~ 1785642 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGAGCGCGCACAATGATCTCGGGTCAGCACCCGTGGGTACTTTCCATtacaaaacgaaacaaaaatgccatttattataCTGTGAATGGAATTGATTGCCCACTGATTAATCGAGCCATAATTTAGCTAGCCTTTATTATTTACCTATCTAGAAAATGTCTTAAACTACGCTAACGAATAAATATAACGGTTACAGTAAACTTCGGAATGAAAGGTGTGCCGGCAGAGACATGCAACATGC

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47959 lncRNA upstream 18511 1766596 ~ 1766890 (+) True G32542
XR_006251105.1 lncRNA upstream 19994 1762921 ~ 1765407 (+) True LOC122346170
TU47957 lncRNA upstream 23119 1762005 ~ 1762282 (+) True G32540
TU47956 lncRNA upstream 23430 1761564 ~ 1761971 (+) True G32539
TU47955 lncRNA upstream 25171 1759994 ~ 1760230 (+) True G32538
TU48082 lncRNA downstream 115816 1901458 ~ 1905499 (+) True LOC122346050
TU48091 lncRNA downstream 172476 1958118 ~ 1958584 (+) True G32643
TU48092 lncRNA downstream 180537 1966179 ~ 1966378 (+) True G32644
TU48094 lncRNA downstream 205907 1991549 ~ 1993168 (+) True G32646
TU48090 lncRNA downstream 210378 1996020 ~ 1997056 (+) True G32642
XM_043239639.1 mRNA upstream 5975 1773965 ~ 1779426 (+) False ydjc
XM_043239638.1 mRNA upstream 5975 1774239 ~ 1779426 (+) True ydjc
XM_043238200.1 mRNA upstream 40230 1743315 ~ 1745171 (+) True LOC122344671
XM_043239928.1 mRNA upstream 132985 1623097 ~ 1652416 (+) True ppil2
XM_043239929.1 mRNA upstream 163074 1616062 ~ 1622327 (+) True gal3st1a
XM_043240536.1 mRNA downstream 6186 1791828 ~ 1793266 (+) True ccl19a.2
XM_043240535.1 mRNA downstream 8892 1794534 ~ 1796438 (+) True ccl19a.1
XM_043240534.1 mRNA downstream 11192 1796834 ~ 1806041 (+) True tctn2
XM_043240563.1 mRNA downstream 21308 1806950 ~ 1820557 (+) True sec14l8
XM_043240564.1 mRNA downstream 21755 1807397 ~ 1820557 (+) False sec14l8
TU47619 other upstream 669996 1112496 ~ 1115405 (+) False selenoe
TU47584 other upstream 728248 1055193 ~ 1057153 (+) True G32277
TU47246 other upstream 1334036 450192 ~ 451365 (+) False tal2
XR_006251007.1 other upstream 1353936 419246 ~ 431465 (+) True susd1
TU47965 other downstream 6218 1791860 ~ 1793243 (+) False ccl19a.2
TU48046 other downstream 37012 1822654 ~ 1826114 (+) True G32611
TU48056 other downstream 49506 1835148 ~ 1843013 (+) True G32620
TU48080 other downstream 115816 1901458 ~ 1905288 (+) False LOC122346050
TU48087 other downstream 224769 2010411 ~ 2018459 (+) False LOC122345711

Expression Profile