RNA id: XM_043240301.1


Basic Information

Item Value
RNA id XM_043240301.1
length 3995
RNA type mRNA
GC content 0.43
exon number 5
gene id ypel1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1673024 ~ 1694286 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tattgtaattgcatGGAAAAGTGACCACGGTGcactttctctttttgtgtttcaaaaaaaaaaaaactcaaaggtGGTTTCGGACGAATATGAGGATGAGTAAAGGATGTAACAGTTGTATTTTCTCCTGTGGTGTCTGTGTGGAGCGTGCCACACATCCACTCCACAACAACGACGGCTTTTGCTTGCATCTTCCAGTGTTTCTTCTGTCAGCAAGTTCAGCAGAGCTGCAACTCGTCTAGCGCCAGCCCGGAGGAACCCAGTGAGGAGCACCACGACTGTGAGATGGTGAAAATGACAAAGTCCAAGACCTTTCAGGCTTACCTGCCCAATTGTCACCGAACCTACAGCTGCATCCACTGCCGGGCACATCTCGCCAATCACGATGAGCTCATCTCAAAGTCATTCCAAGGCAGCCAGGGACGAGCCTACCTCTTCAACTCAGTTGTGAATGTCGGTTGTGGTCCAGCAGAGGAGAGGGTTCTCCTGACAGGTTTACACGCTGTGGCGGACATCTACtgtgaaaactgtaaaaccaCTCTGGGCTGGAAATACGAGCACGCGTTTGAGAGCAGTCAGAAATACAAAGAAGGCAAGTTCATCATCGAGCTGGCTCACATGATCAAAGATAATGGCTGGGAGTGACCTTCACCAACCTGCTCTCAGCTCAGTGACCTTTGGGCTGCTCTGCCGTGGACTTTGCCGAGTGACACCACCACacgtacacaaacaaaaaaacgcacagacacgcacgcgcgcacacacacacgccaccgTCGGCCATGACACATCCTGACATCTCTACCGGGTCATCACAAAACTCAAAAGGCAGAGCGACGGAAAGCGAATCGCAGACGTCTACGGTCACTGAAAGACTCTCTAGGACCTTTTTCCGAGATGTACATGTCAACACTTTGGGATCCGAACCTTCTCCCTTCCTGTTCGACTGCCCCGTTAACTGGTTTCAGTGTGCTCGGCCCTCCTCGTGTGCAAGCTGTTAACAGTATCCAGAAGACACAGTctcattttttcatttgacaTCCTCGTGAACGAGCAGGAGGTGTGCGTCTTGGTGTGCgtactttctttgtttttgacaGGAATCTCGACTCCTTCCTGGTGGACTGATGTTACCggttagctttttttatattttcttctcTGAGTCAAACCCGTTCTGATTGTCTTTCCTTTCACTCTGGGGTAGTGACAGTTGACATGCGTTATTAGAGTTGGGGTTGGTTTCAGGGTTAGGCTATGTAGCAGTATATTTGAGATGGGGGGGGGTGGGCGTTCATCATTGCAGTGGCATGGCATTTCCCCCCTGCGTTTTAcctgttttatttcagaattgaaatgtgtatatttttttttttcttcctcggATGACTTCACTGTGCAATTCGTGGGACACTCTGGTACAGCAGTAGCGTCTGACCCCTACAGGAGCTTTAGTTGTCTCTGGTGCTTTTGGTGAGATTACACAAACACGCGTCTTTGAGTTGGCATTTGTGGCAGGTTCCATTTTTGCAACCGTATTATAGGCgagagaaaaacaagacaagcaACAGCCGTTTGGATGCACTGGACATTGGGGAAATCTGAAACTGGTGTCCTCGGAACATTGTTTGCGTTACATTTTCATCCCCCTTCACGCCAAATGATGACAAGATTTTACAAAACTATTGTTGTTGATATTACAATCATGTATATGTTCATTGCTATGTGTAATTTATGTGTTAAACCACATGTCTGGACATGCACACGCATGTTAGCTCAGTGTGTTTTACACATTATGTTTTATGGCATACTTGAATGCAGTTACTTTGTTTGCACTTTGCAGAGGCCTTGTTCATGGGTTTAGAGGCAAAAGTCTGTCCATTTTATGGcctttttttcatgaaaaataatcGAATGATTGTATTAGATGCTTTGAATGATTTTCAGGGTTGGGTGGTTGCTGGCTTGATCATCTCCCTCTACTTTCAAACACTCGAAATCTGCTGCTTTCGCTTTCTTCCGCAGGCTGGCAGACCTGTTCGCTACGCTCGCAATTCGTCCAATTGGATTTTGCGCATCAGAAGCAGGTCTCGAATTTTACAGTCGGGAAACCATTCAGTGTGGCGTTACGCGATTCTTTTGCTGCTAATAGAGATAAATGCAATCCGGAGCTTTCACTTTAAACCTTCTGCACTTTACCCGGACTGTCTGAGAGCATGCGAGCGGATGTGTTCCTTTTGTAGCTTTTCTCCACATCTTTGCCTCTAAGCAGCATGAATCTTGTGCCtcttcaaaagataaaaaaaaaaagaaaaaaagaaaagaaatctcCCTCTCCTCTGTGTTGTGCGGCGCATGACTCCGAGAACCCAGCACATCTATTAGAAGCTCTGCTGGAGCTTCATATCGAACTCGAAAACGACACGAACTTGGAAGCGAACCTCACAGAACCTCTATTCACTTGAAAGTCAGATATAAtccagtatttttttcatagttCCATGTCGAAGCTAGTGATGTTATGAAACGGTATATAAAAGGGGCGGGGCTGTTAGATCGGGAGGGGGTGGAGCTTGCTTCCTGTAGAGGTAAAGAGGGGCATTTAATGTAGATTTTTATcgaatataattaaatatatataaatatatcgaATCGTACAGATGAATATCGAGGTTTCGTTGTGCTTAAGGGTGGGTGGGATGGTGGGCAATAGTAGAATGAGCGGTGAACCCTCAGTTAGCGTTCGCTGCCGATAAGGTCAGTCCGGTCACGTGACCTTCGAATCAGTCAAAgacaatgcaaacaaaatagTTGTAGAAATATCTTACTTGAAAGATGATACAGAGTTACAGACAATACATTGTCCCTCTCACACAGTTTTGTACATAAAGTAACATATTTAAGGTTTTATACATATTTCTACTGGGTTAGTTTCTCTACTTCCCCGACTTGAAGCACTTTTGTTCACTGTATCTCTGgctttatatttgtgtgtgaatggcgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtttggatgcaTGTATGCGTGTTCCCTTCCCTCACTTTATTTGTAGACGTTTTTGCTGTCGTTCACTAGTTCCTCTGTGCTGTTTCCTTTTATGACACTTCTTTTGCTGTCTCACCGCGTGTTTTGATGTGTGCTCTCTTAGCTTGACTATAATgagctttgtatttttattttttttgtttaatattaaagttgATTTTTCAATAGTTTCCAGTCGAGAGCCTAATAGCAGAATGTCTGCTGGTCGTGTTTTAGCATCATGGTCAGCGGTGAGCTGGATTCACCTGCCCAAATTTCACAATAGAAACACCGACCCAGAccgttttacaaaaaaaaaaaaaaacagctttccCTAAGATTTTCAGAAACAGAACTAGATCCAGGCCAGTGTCACTGTCAGTGTGCACCAAAAAATAAGACATCGCTCAACCGAAACCTTTTTACTGAGAACCACTTggtcaaaccaaaaaaatccaGTTTGTGGCCTCTCTGAATACCAAGTGggaaatttccttttttttattgtgattttgtctttttacagCAACATATTAAGGTGTTTCTGATATTGGCAGTAGAAAAGATTGTTTACTGCTGTTTCTTTTTAGTGACACTGGTTTTAAACCTTTCTAGAGCTGTTACTCTGAGATTTGCCATTCAGACGACATCTAGTTTAAGGCAACAGTGGTATGCAAAGGAAACGATTGTATAAGTTTGCCGAGTTATTTTCTTAGGACTGTTAAAATATAAGGTCTACAGCATGTTGTATTTATAATGGCTATATTAAGTCGTGCCTGGTTTTCTTTCGTTCGTTTTTCTTCTTCAatgcaaaaaagcttttttcttctttttacttGATTACATTGCTTTGCATTCTGTCCTAGTAAAGAAAAGTCACATTTGtctgttttcactgtattgtAAACTATTCAGATATCACAATAAAGCTTAAATGGTATTGCA

Function

GO:

id name namespace
GO:0031641 regulation of myelination biological_process
GO:0051898 negative regulation of protein kinase B signaling biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47992 lncRNA downstream 6118 1666698 ~ 1666906 (-) True G32572
TU47888 lncRNA downstream 65277 1606425 ~ 1607747 (-) True G32486
TU47861 lncRNA downstream 105875 1541226 ~ 1567149 (-) True G32462
TU47864 lncRNA downstream 133656 1537398 ~ 1539368 (-) True G32463
TU47832 lncRNA downstream 159712 1513045 ~ 1513312 (-) True G32440
TU48000 lncRNA upstream 69647 1759644 ~ 1759857 (-) True G32579
TU48002 lncRNA upstream 72481 1762478 ~ 1762829 (-) True G32581
TU48004 lncRNA upstream 73278 1763275 ~ 1763648 (-) True G32583
TU48007 lncRNA upstream 76601 1766598 ~ 1766880 (-) True G32586
TU48023 lncRNA upstream 104507 1794504 ~ 1796557 (-) True G32596
XM_043240226.1 mRNA downstream 69964 1597847 ~ 1603060 (-) True p2rx2
XM_043240429.1 mRNA downstream 93396 1572148 ~ 1579628 (-) True lztr1
XM_043238289.1 mRNA downstream 102958 1569404 ~ 1570066 (-) True cldn26
XM_043238410.1 mRNA downstream 108478 1543418 ~ 1564546 (-) False LOC122344835
XM_043240297.1 mRNA upstream 6435 1696432 ~ 1717901 (-) True mapk1
XM_043240215.1 mRNA upstream 31236 1721233 ~ 1732137 (-) True ppm1f
XM_043238199.1 mRNA upstream 43102 1733099 ~ 1745696 (-) True top3b
XM_043240861.1 mRNA upstream 79439 1769436 ~ 1771792 (-) True sdf2l1
XM_043239640.1 mRNA upstream 90168 1780165 ~ 1785389 (-) True ube2l3b
XR_006250937.1 other downstream 318610 1342606 ~ 1354414 (-) False lrrc74b
XR_006251111.1 other downstream 336837 1322296 ~ 1336187 (-) False castor1
XR_006251108.1 other downstream 336840 1312604 ~ 1336184 (-) True castor1
TU48139 other upstream 276640 1966637 ~ 1967748 (-) False G32676
TU48140 other upstream 276640 1966637 ~ 1967748 (-) True G32676
TU48163 other upstream 330111 2020108 ~ 2022894 (-) False LOC122344636
TU48378 other upstream 806507 2496504 ~ 2554146 (-) True G32857
TU48396 other upstream 890551 2580548 ~ 2585426 (-) False snrnp27

Expression Profile