RNA id: TU48087


Basic Information

Item Value
RNA id TU48087
length 2255
RNA type TUCP
GC content 0.47
exon number 8
gene id LOC122345711
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2010217 ~ 2019150 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTTGACAACACTAATAGGCATTCGCCCAGCAACAAGAGGAACGGTACACCTGGCTTGGTGGCCCACAGGCCTTTGAAAGAACGAGTCATTCATGTTCTGGCCTTAAAGCCCTACAGCAAGCCAGAACTACTGCTCTGGCTGGAGAAGGAGAAAGCCAGCCCCAAGGACAAGGCCGACTTGAATGCTGTGCTGGATGAgGTGGCTAAACTCAATCCCAAAGACCACAGCTTTACCCTGAAGGATGATTTCTACAGACATGTGCGGAGAGACTGGCCCGGCTATGTCGAGGAAGAGCGGCAACTCATTCAAAGGGTGTTGGCAAGAAAACTCCAGCctctcagcagcagcagcagcagccagtTGAAAAGCCTCCAGTCCAGCCATTCATTCCACAAAACCTCAGGGGATTCTCCATCCCAGCTCAGCCCTGTCAAGAATCTCTCCATGAAACGCCCAGTGCCTTCCGACCATCCAGAAAGTCAGACGCCGAAAAAGCAACGTTTATTAGACCAGAGCATGCCCTCGCAATCTCCTTCCAACGGACATCTCGGCTCCTCCGTGAGCCGTAGCTCTTCCACTCACGGAAACGCGCAAGTTTGCAAAGGAGCAGCGGCGTGGCTCAGCAGAGCCCCGATGGTCTTTACCAGCGGCACAAGCTCGCGGAGTCCAACAGCGTACCCAAACCAGAACAGCCGGAACCAGCGCAGCAGCCGTCGTCCAGCCCCAAACACCCACGAACTGAACCAGAAATCTGCACTGAACAGCAGCTCGCAAACGGCCAGCACAAAAAGAAGTCCAAGAAGCATAAAGAAAAGGAGAGGGAGAGATTAAAACCTGAGTGGGTCGAGACCAGCCCGGACCTCAAACAGAACCAGGAAAATATTAATGACCATGGACGACCCAACACACCTGTCACCCGTGCCTCGCCCGATGACCTGCCTGACTATTTATTaaaaTACAACGCTATTACAGGCTCTGAGCAGCGGCAGAGATACAAAGAGGATTTTTGTGCGGAATATGACGAGTACAGGGACCTTCATGAACGCATAGGGAAAGTCACAGAGATGTTTGTTCAGCTGGGATCCAAGATAAAGACGCTGTCTCCCGGGACACACAAGTATAAGgtAATGGAAGATCAAATAATGGAGAAGTATAGGAAGTATAAGAAGAAGTTTCCAGGCTACCGGGAAGAAAAGAAGCGCTGCGAATATCTCCATCAGAAACTGTCACACATCAAAGGCCTGATTCTGGACTATGACCGCACACAAGCACCCTCCTAGTGCCAGCCGTTCcactctcctcctcctcctcctcctccaaacGACTCCTCAGTGGAAATAAACCAGGACCAAATGTCTGTTAAGCAGGACAAGGCATTTCCACGAGGAGGTTCCTCCACACGAACTGTGGGTAAACGGTGTGGAGGCTGAGGATCTAAGCCCAAACTATCAAACAAAGGCCAAGACCTCCGACTAGTGACTTAAGCCCTttaaagtaaactttttttatttttttttttatttgttcgtttgtttgttcGTGTAAAAAGTGAGGAATTGGTTAGCCTTGGGACACAACATAagccaaaatataatttttttttcttccctacCCAAATGCAGCATATGTGTAACAGTTGCCCGTGATCTTCTAACCTGGGCTCCGAGCTCTGACTTTCAGGGCCGTGGGCCGCTTTTATGGTACAATCATAAAGCCTGGACGATGAGAGATGATTATCTGTACTGTGCTCGGTCTGTCAGTGATTTATCAGAGAACTTAAGCACAgtttctattttgatattttactgAATGTATATTTGTACACTTGTAAGATCTCGACATCTATAATAGAGCGTTTAATCACTGGATAGAATAAGGGAAACCTGGAAGGTGGACCTACCAAACTCTGTAGAGTACGAGGTGCAATCCGTCATATGAGCGTCCGTCAGACTCTTAACTAGACGAGACCTTCCTCTTTTGTGTGTAGCTGCACGGTGAGCTCTGGGATGCAAATTTAATCTTGATTTCCTTTAGCCAATCGTGTAATGAGAGGAAAGGTGCTTAAGCTTGACAGTTCAAAATCGATAAAGTGATAATTTTCTCATGATTTTTGTGTCCAGGGTCCAGTGCTCAAACCACTACAGCACACTGTGTCCTTAAATAATGatgtttataacattattattattattattgctattattattattatttggacaCTAAACAGCAGAAACAATCATGTTTTGAAGCaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48099 lncRNA upstream 11731 1998179 ~ 1998680 (+) True G32649
TU48097 lncRNA upstream 11818 1998179 ~ 1998593 (+) False G32649
TU48090 lncRNA upstream 13355 1996020 ~ 1997056 (+) True G32642
TU48094 lncRNA upstream 17243 1991549 ~ 1993168 (+) True G32646
TU48092 lncRNA upstream 44033 1966179 ~ 1966378 (+) True G32644
XR_006250943.1 lncRNA downstream 4904 2023363 ~ 2029326 (+) True LOC122344883
TU48167 lncRNA downstream 55930 2074389 ~ 2076045 (+) True G32693
TU48168 lncRNA downstream 58495 2076954 ~ 2077433 (+) True G32694
TU48177 lncRNA downstream 225208 2243667 ~ 2243887 (+) True G32702
TU48229 lncRNA downstream 399918 2418377 ~ 2420831 (+) True G32737
XM_043240708.1 mRNA upstream 92959 1906927 ~ 1917452 (+) True LOC122346053
XM_043240703.1 mRNA upstream 105129 1900627 ~ 1905282 (+) False LOC122346050
XM_043240712.1 mRNA upstream 109986 1899595 ~ 1900425 (+) False LOC122346055
XM_043240710.1 mRNA upstream 109986 1899601 ~ 1900425 (+) True LOC122346055
XM_043239188.1 mRNA upstream 118307 1882015 ~ 1892104 (+) True LOC122345241
XM_043240752.1 mRNA downstream 160124 2178583 ~ 2207545 (+) True LOC122346081
XM_043240758.1 mRNA downstream 231199 2249658 ~ 2264585 (+) True LOC122346086
XM_043239536.1 mRNA downstream 251754 2270213 ~ 2277034 (+) True LOC122345419
XM_043239538.1 mRNA downstream 251754 2270213 ~ 2277034 (+) False LOC122345419
XM_043239537.1 mRNA downstream 252027 2270486 ~ 2277034 (+) False LOC122345419
TU48080 other upstream 105123 1901458 ~ 1905288 (+) False LOC122346050
TU48056 other upstream 167398 1835148 ~ 1843013 (+) True G32620
TU48046 other upstream 184297 1822654 ~ 1826114 (+) True G32611
TU47965 other upstream 217168 1791860 ~ 1793243 (+) False ccl19a.2
TU47619 other upstream 895006 1112496 ~ 1115405 (+) False selenoe
TU48185 other downstream 246686 2265145 ~ 2268194 (+) True G32706
TU48610 other downstream 1586727 3605186 ~ 4144396 (+) False G33015
TU48613 other downstream 1586727 3605186 ~ 4144396 (+) True G33015
TU48849 other downstream 2604048 4622507 ~ 4623060 (+) True G33174
TU49128 other downstream 3585874 5604333 ~ 5649885 (+) False G33355

Expression Profile