RNA id: TU48097


Basic Information

Item Value
RNA id TU48097
length 415
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G32649
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1998179 ~ 1998680 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGACAGCGTCTTTATCTTGGATCCCAGCTGAACAAACATCTCTGTGACTTTCCCTATGCGTTCATGAAGGTCCCTGTACTGCGTCATATTCCGCACAAAAATCCTCTTTGTATCTCTGCCGCTGCTCAGAGCCTGTAATAACGTTgtattttctggaaaaaaattaattccttGAATGAACTAAACCATTTAACAATAGCAATAATTCAAGTGGCTGGGCGGAATCCCAAGAGAAACCAGTAGGTGGCGctacatgttaaaaataattgcgTGTTCTCATTCTTGGGTTGTTTGTCTGAAACCACCAGTTCCTTTAAAAGCTCAAATACATTTAACGCAAACAATCGTTCTATATTTTAACTTGAGTTCTTACGTTTCGTTCTGCTCCTTAATCATCAGCGGACAATCTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48090 lncRNA upstream 1123 1996020 ~ 1997056 (+) True G32642
TU48094 lncRNA upstream 5011 1991549 ~ 1993168 (+) True G32646
TU48092 lncRNA upstream 31801 1966179 ~ 1966378 (+) True G32644
TU48091 lncRNA upstream 39595 1958118 ~ 1958584 (+) True G32643
TU48082 lncRNA upstream 92680 1901458 ~ 1905499 (+) True LOC122346050
XR_006250943.1 lncRNA downstream 24770 2023363 ~ 2029326 (+) True LOC122344883
TU48167 lncRNA downstream 75796 2074389 ~ 2076045 (+) True G32693
TU48168 lncRNA downstream 78361 2076954 ~ 2077433 (+) True G32694
TU48177 lncRNA downstream 245074 2243667 ~ 2243887 (+) True G32702
TU48229 lncRNA downstream 419784 2418377 ~ 2420831 (+) True G32737
XM_043240708.1 mRNA upstream 80727 1906927 ~ 1917452 (+) True LOC122346053
XM_043240703.1 mRNA upstream 92897 1900627 ~ 1905282 (+) False LOC122346050
XM_043240712.1 mRNA upstream 97754 1899595 ~ 1900425 (+) False LOC122346055
XM_043240710.1 mRNA upstream 97754 1899601 ~ 1900425 (+) True LOC122346055
XM_043239188.1 mRNA upstream 106075 1882015 ~ 1892104 (+) True LOC122345241
XM_043240123.1 mRNA downstream 11624 2010217 ~ 2019150 (+) True LOC122345711
XM_043240752.1 mRNA downstream 179990 2178583 ~ 2207545 (+) True LOC122346081
XM_043240758.1 mRNA downstream 251065 2249658 ~ 2264585 (+) True LOC122346086
XM_043239536.1 mRNA downstream 271620 2270213 ~ 2277034 (+) True LOC122345419
XM_043239538.1 mRNA downstream 271620 2270213 ~ 2277034 (+) False LOC122345419
TU48080 other upstream 92891 1901458 ~ 1905288 (+) False LOC122346050
TU48056 other upstream 155166 1835148 ~ 1843013 (+) True G32620
TU48046 other upstream 172065 1822654 ~ 1826114 (+) True G32611
TU47965 other upstream 204936 1791860 ~ 1793243 (+) False ccl19a.2
TU47619 other upstream 882774 1112496 ~ 1115405 (+) False selenoe
TU48087 other downstream 11818 2010411 ~ 2018459 (+) False LOC122345711
TU48185 other downstream 266552 2265145 ~ 2268194 (+) True G32706
TU48610 other downstream 1606593 3605186 ~ 4144396 (+) False G33015
TU48613 other downstream 1606593 3605186 ~ 4144396 (+) True G33015
TU48849 other downstream 2623914 4622507 ~ 4623060 (+) True G33174

Expression Profile