RNA id: TU48146


Basic Information

Item Value
RNA id TU48146
length 533
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G32681
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1996276 ~ 1996843 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAAACTATCAAACAAAGGCCAAGACCTCCGACTAGTGACTTAAGCCCTttaaagtaaactttttttttttttttttttttttttatttgtttgtttgtttgttcgtaaAAAGTGAGGAATTGGTTAGCCTTGGGACACAACATAagccaaaatataatttttttttcttccctacCCAAATGCAGCATATGTGTAACAGTTGCCCGTGATCTTCTAACCTGGGCTCCGAGCTCTGACTTTCAGGGCCGTGGCCGCTGGTGGTACAATCATAAAGCCTGGACGATGAGAGATGATTATCTGTACTGTGCTCGGTCTGTCAGTGATTTATCAGAGAACTTAAGCACAgtttctattttgatattttactgAATGTATATTTGTACACTTGTAAGATCTCGACATCTATAATAGAGCGTTTAATCACTGGATAGAATAAGGGAAACCTGGAAGGTGGACCTACCAAACTCTGTAGAGTACGAGGGTGCAATCCGTCATATGAACGTCCGCCGTCAGACTCTTAACTAGACGAGA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48138 lncRNA downstream 29779 1966329 ~ 1966532 (-) True G32675
TU48110 lncRNA downstream 103236 1851228 ~ 1893075 (-) True G32656
TU48107 lncRNA downstream 113919 1848824 ~ 1882392 (-) True G32654
TU48023 lncRNA downstream 199754 1794504 ~ 1796557 (-) True G32596
TU48007 lncRNA downstream 229431 1766598 ~ 1766880 (-) True G32586
TU48148 lncRNA upstream 3042 1999885 ~ 2000457 (-) True G32682
TU48158 lncRNA upstream 20535 2017378 ~ 2030493 (-) True G32688
TU48176 lncRNA upstream 226502 2223345 ~ 2224056 (-) True G32701
TU48178 lncRNA upstream 246824 2243667 ~ 2243883 (-) True G32703
TU48187 lncRNA upstream 271977 2268820 ~ 2269330 (-) True G32707
XM_043238324.1 mRNA downstream 97721 1893780 ~ 1898590 (-) True LOC122344761
XM_043239640.1 mRNA downstream 210922 1780165 ~ 1785389 (-) True ube2l3b
XM_043240861.1 mRNA downstream 224519 1769436 ~ 1771792 (-) True sdf2l1
XM_043238199.1 mRNA downstream 250615 1733099 ~ 1745696 (-) True top3b
XM_043240215.1 mRNA downstream 264174 1721233 ~ 1732137 (-) True ppm1f
XM_043238158.1 mRNA upstream 23253 2020096 ~ 2022922 (-) True LOC122344636
XM_043238500.1 mRNA upstream 55862 2052705 ~ 2058733 (-) True LOC122344882
XM_043240718.1 mRNA upstream 90942 2087785 ~ 2090156 (-) True LOC122346063
XM_043240213.1 mRNA upstream 93309 2090152 ~ 2099181 (-) True LOC122345768
XM_043240773.1 mRNA upstream 388308 2385151 ~ 2418053 (-) True LOC122346100
TU48139 other downstream 28563 1966637 ~ 1967748 (-) False G32676
TU48140 other downstream 28563 1966637 ~ 1967748 (-) True G32676
TU47988 other downstream 302337 1674490 ~ 1693974 (-) False ypel1
XR_006250937.1 other downstream 641897 1342606 ~ 1354414 (-) False lrrc74b
XR_006251111.1 other downstream 660124 1322296 ~ 1336187 (-) False castor1
TU48163 other upstream 23265 2020108 ~ 2022894 (-) False LOC122344636
TU48378 other upstream 499661 2496504 ~ 2554146 (-) True G32857
TU48396 other upstream 583705 2580548 ~ 2585426 (-) False snrnp27
XR_006250982.1 other upstream 590710 2587553 ~ 2605915 (-) False add2
TU48454 other upstream 938900 2935743 ~ 3012819 (-) False LOC122344624

Expression Profile