RNA id: TU48148



Basic Information


Item Value
RNA id TU48148
length 573
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G32682
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1999885 ~ 2000457 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCGATACTTTTCCTACATCTCATCTTAAAGCTTGTTGCACGCTGTAGTATCTATGCAATGGACTGCAGTTTCTTGTGTGCACTAAAACAGGTTTGTGATTGATATACCTGAGATTAGAATAAGagcctctttttttgttttttttttcttgtgaagaTCATGTTTGGCGCCGTCTGCTCTTTATTTATGGAGATGCTGGAGGCGCTTCGGTCGCTGCTGTTTGCAGGAGCCAATTAAGCTGCCGGTCCACAGCATTGCCGCTTTCCATCTGCAAAGTTTGTGAAatctcccttctttctttcctcccaGAAACGCCAGCAGTGCCTTCGACCATCCAGAAAGTCAGACGCCGAAAAAGCAACGTTTATTAGACCAGAGCATGCCCTCGCAATCTCCTTCCAACGGACATCTCGGCTCCTCCGTGAGCCGTAGCTCTTCCACTCACGGAAACGCAAGTTTGCAAAGGAGCAGCGGCGTGGCTCAGCAGAGCCCCGATGGTCTTTACCAGCGGCACAAGCTCGCGGAGTCCAACAGCGTACCCAAACCAGAACAGCCGGAACCAGCGCAGCAGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU48146 lncRNA downstream 3042 1996311 ~ 1996843 (-) True G32681
TU48147 lncRNA downstream 3149 1996276 ~ 1996736 (-) False G32681
TU48138 lncRNA downstream 33353 1966329 ~ 1966532 (-) True G32675
TU48110 lncRNA downstream 106810 1851228 ~ 1893075 (-) True G32656
TU48107 lncRNA downstream 117493 1848824 ~ 1882392 (-) True G32654
TU48158 lncRNA upstream 16921 2017378 ~ 2030493 (-) True G32688
TU48176 lncRNA upstream 222888 2223345 ~ 2224056 (-) True G32701
TU48178 lncRNA upstream 243210 2243667 ~ 2243883 (-) True G32703
TU48187 lncRNA upstream 268363 2268820 ~ 2269330 (-) True G32707
XR_006251091.1 lncRNA upstream 355509 2355966 ~ 2356780 (-) True LOC122346102
XM_043238324.1 mRNA downstream 101295 1893780 ~ 1898590 (-) True LOC122344761
XM_043239640.1 mRNA downstream 214496 1780165 ~ 1785389 (-) True ube2l3b
XM_043240861.1 mRNA downstream 228093 1769436 ~ 1771792 (-) True sdf2l1
XM_043238199.1 mRNA downstream 254189 1733099 ~ 1745696 (-) True top3b
XM_043240215.1 mRNA downstream 267748 1721233 ~ 1732137 (-) True ppm1f
XM_043238158.1 mRNA upstream 19639 2020096 ~ 2022922 (-) True LOC122344636
XM_043238500.1 mRNA upstream 52248 2052705 ~ 2058733 (-) True LOC122344882
XM_043240718.1 mRNA upstream 87328 2087785 ~ 2090156 (-) True LOC122346063
XM_043240213.1 mRNA upstream 89695 2090152 ~ 2099181 (-) True LOC122345768
XM_043240773.1 mRNA upstream 384694 2385151 ~ 2418053 (-) True LOC122346100
TU48139 other downstream 32137 1966637 ~ 1967748 (-) False G32676
TU48140 other downstream 32137 1966637 ~ 1967748 (-) True G32676
TU47988 other downstream 305911 1674490 ~ 1693974 (-) False ypel1
XR_006250937.1 other downstream 645471 1342606 ~ 1354414 (-) False lrrc74b
XR_006251111.1 other downstream 663698 1322296 ~ 1336187 (-) False castor1
TU48163 other upstream 19651 2020108 ~ 2022894 (-) False LOC122344636
TU48378 other upstream 496047 2496504 ~ 2554146 (-) True G32857
TU48396 other upstream 580091 2580548 ~ 2585426 (-) False snrnp27
XR_006250982.1 other upstream 587096 2587553 ~ 2605915 (-) False add2
TU48454 other upstream 935286 2935743 ~ 3012819 (-) False LOC122344624

Expression Profile