RNA id: TU48163


Basic Information

Item Value
RNA id TU48163
length 1730
RNA type TUCP
GC content 0.42
exon number 2
gene id LOC122344636
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2020096 ~ 2022922 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGAATGTTCTATTGCCTATCCCACTGTCTGTTTTAGCTTTTTTCGACATAATGTCATACTCTCTAAATCTCTTATAATTGCGAAATAggtcatttgttttgtaagCGCGACACAATAATGATTTACTAAAAGGGGTGCGAAGTTTGTTCTTTGGTTCCGACGCGTGTTTTGTATGTTGCCTGAACTTTCACCTCGATTCCCACAGCCCAGCAGGACCGTGTGGATTTGACAAAATAGTGACAAGTCTAACACGAGCTTTTAACTTCGAGCATGCGTTGCCTGTTGAGCTCTTGGTAATTTATTCCTGGAAGAACCGCGTTCTGTTGCAGCCACATGGAAACTTTCATCAGCTTCAGTAACCAAAGTCAAGGAAGGGACCGTATATTCAGttttcaggcTTGGGAACACCGTCAACTCGATCCATGCGGCCAAGAGCACTCTTCACATTTCTGACCCCATTTTGCGCTTTTGCCTTACTTTTACCAATCTCAACCGTGCCTTGTATTTCATCTGTGACAACGTACTCTGGGCCAGAAGTATCGGGCTGATACAAGACATCGACAAAGAGCGCTGGAGCTTGAACTCCACTCGCTTCTATTTCCTGTCCTTGGTCACGAATCTAACCAGAGACGTCTATGTGATCATCCAGCTCATGGTGCAGAAGTCCCGGGAACGACACTTCAAGCAAAAAATGGAGCAGCACCTCAACGAAAGCCCGGACGTGGCCTGCGTCATCGTGCCTCAGCTCGACGCGTTCCTCTTCCTTCTCCTCGAGAGCCTCAGAAACGAACCGTCTGTGGCTCTCGATACCGTTAAAAACGTCTGCGACCTTTTCATTCCGCTCGACAAACTGGGCATTTACCAAACAAATGCAGGGGTGGTGGGCTTCTGTGGCCTCGTTTCTTCTATTTTGGGCATATTGTCAGTTTTGAGGCCCGGCCTCAAGATCAAGCCGTGATTTGGGGAATGAGGAAAAGGCTTTAGGAACATCCAAAATGTCTTGCATAAGAAAACTTTTCTAACAGATGTTTTGAATTCGTTTTAGTGTGGGATTAGACTACTGTTGaacttgctttttttaaagggatCGATTTAATAGTATAAAGGGAGACAGGAGAGCAGCGCATACCCATAATGCAGCAGCGCACCTGCAGGGCTGTTCTgcacaacataataataaaaaataatagcgTCATTTAGATAAGATTTTACAGTGTGGGTTTGAACGCATGCTGTGTACACTTTCATTAAATAGAGTGCCTTGCTGTATCTGTTATATTATGTAGCCTTAGTGAAATAATACCATCTGTATATAATGCagtatttgtagttttaatagAGATCATGTCACTTTGGTACTGAGGATACTGAAACACGCGggttcataaaaatgcattttgaactTTCCAACAAAAAGATGCTCTTTTGTGATAGCAGATGCTCAACTTCCTGAGATATGTGCTTAATATTTAGTCTCTTCTACATGGAAAACCATCTGTGAAATTAGATATTCTACCTCGTTCTGACAGATCCGTAGTTGTTTACAGATGTGCGTTTGATTTTTAGGTGCCAGACAGAgttttgttggggttttttttttttttttttttttttttcaattttggtTTCTCATGACAAAAGATAAGTTATTACATTCCGATTCGACATATTTGCTTGTCAGCTcaaactgctttaaaacaaactgtgaACTTTtaataaaggattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48148 lncRNA downstream 19651 1999885 ~ 2000457 (-) True G32682
TU48146 lncRNA downstream 23265 1996311 ~ 1996843 (-) True G32681
TU48147 lncRNA downstream 23372 1996276 ~ 1996736 (-) False G32681
TU48138 lncRNA downstream 53576 1966329 ~ 1966532 (-) True G32675
TU48110 lncRNA downstream 127033 1851228 ~ 1893075 (-) True G32656
TU48176 lncRNA upstream 200451 2223345 ~ 2224056 (-) True G32701
TU48178 lncRNA upstream 220773 2243667 ~ 2243883 (-) True G32703
TU48187 lncRNA upstream 245926 2268820 ~ 2269330 (-) True G32707
XR_006251091.1 lncRNA upstream 333072 2355966 ~ 2356780 (-) True LOC122346102
TU48218 lncRNA upstream 351108 2374002 ~ 2375663 (-) True G32727
XM_043238324.1 mRNA downstream 121518 1893780 ~ 1898590 (-) True LOC122344761
XM_043239640.1 mRNA downstream 234719 1780165 ~ 1785389 (-) True ube2l3b
XM_043240861.1 mRNA downstream 248316 1769436 ~ 1771792 (-) True sdf2l1
XM_043238199.1 mRNA downstream 274412 1733099 ~ 1745696 (-) True top3b
XM_043240215.1 mRNA downstream 287971 1721233 ~ 1732137 (-) True ppm1f
XM_043238500.1 mRNA upstream 29811 2052705 ~ 2058733 (-) True LOC122344882
XM_043240718.1 mRNA upstream 64891 2087785 ~ 2090156 (-) True LOC122346063
XM_043240213.1 mRNA upstream 67258 2090152 ~ 2099181 (-) True LOC122345768
XM_043240773.1 mRNA upstream 362257 2385151 ~ 2418053 (-) True LOC122346100
XM_043239484.1 mRNA upstream 501665 2524559 ~ 2527337 (-) True purba
TU48139 other downstream 52360 1966637 ~ 1967748 (-) False G32676
TU48140 other downstream 52360 1966637 ~ 1967748 (-) True G32676
TU47988 other downstream 326134 1674490 ~ 1693974 (-) False ypel1
XR_006250937.1 other downstream 665694 1342606 ~ 1354414 (-) False lrrc74b
XR_006251111.1 other downstream 683921 1322296 ~ 1336187 (-) False castor1
TU48378 other upstream 473610 2496504 ~ 2554146 (-) True G32857
TU48396 other upstream 557654 2580548 ~ 2585426 (-) False snrnp27
XR_006250982.1 other upstream 564659 2587553 ~ 2605915 (-) False add2
TU48454 other upstream 912849 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other upstream 928568 2951462 ~ 2960177 (-) True G32908

Expression Profile