RNA id: TU48244


Basic Information

Item Value
RNA id TU48244
length 1370
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G32749
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2598250 ~ 2599639 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agttgactgtcaacatttttaaaaatagaaatattgtttgcaaccacttacctttaaatatttatcataatcTTTCTCAGTGTGTGatgcattcattatttaaaaagagtATTGACCAAGGCTgcgtttgtttaataaaaaatacagtaaaaacactaaaattgtgaaacattattataatttaaaaaaacttctttCTATTTCAGTATCTGTTagattgtaatttatttccgtgatcaaagctgtattttcagcatcattactctagtttTCAGCGgcctttcagaaatcattcttatacgCTGATTTAATGCTCACCTTTTCTTTCTTGTTGTGCTTCACAggatttttgtggaaactgcaatttttagaattttttagaAAAGCgtttatttggaatatttttgtCTACAGTGTATAAAGTTTTACTGTCAATTCTGATCAAATTAAAGCGTGCTcgctaaataaaacaattaaattattttttaaaaaagcagataacattaaaaaacttGACATGTACAATAACCAGATCGGCACTTTCTTAAGAAAACACAAGTGCTTCCAATCTAGAAAGAAGTTAAGTTTCACAAGAGTcctctttttaacttttactttttctaCATGACAGTCAACACACGGCACGTCTTTATGCAGATCAATATCCATGCAGACATAACTTCTTAACAACTCAGTGAAGAATGTGAAGTTAGTGACTGGTTTGTGTTGAGTGTGTGAGGTTTAACCTCGTAAGAGCTGCTGTAATACACAGACATGTGCTTTAAGTTTAGAATGAAGCATTAAGTAACGTCTGTCCTCATACTGATgaacaaaacaacacagagaAGAAACATACGTGAACAGTTCCAGTAAAGTCCACCACAGAGAACTCTTCACCTCTGTCCTTCATTCAACATGTTCCCTCCGTTCTGACCAGCAACAACATAAACCCCCTGCACTATCAGTCtgtctcctccctctctctctttctccctccctctctatctctctctctctgtctctctctctctgtctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctgtctctctctctctctctgtctctctctgtctctctctctctctctctctctgtctctctctctctctctgtctctctctctctctctctctctctctctgtctctctgtctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48260 lncRNA upstream 18467 2578586 ~ 2579783 (+) True G32765
TU48229 lncRNA upstream 177419 2418377 ~ 2420831 (+) True G32737
TU48177 lncRNA upstream 354363 2243667 ~ 2243887 (+) True G32702
TU48168 lncRNA upstream 520817 2076954 ~ 2077433 (+) True G32694
TU48167 lncRNA upstream 522205 2074389 ~ 2076045 (+) True G32693
TU48269 lncRNA downstream 8577 2608216 ~ 2609601 (+) True G32770
TU48271 lncRNA downstream 27445 2627084 ~ 2641100 (+) False LOC122345783
TU48303 lncRNA downstream 266527 2866166 ~ 2867373 (+) True G32798
TU48332 lncRNA downstream 348454 2948093 ~ 3021585 (+) False G32819
TU48326 lncRNA downstream 348484 2948123 ~ 3021816 (+) False G32819
XM_043239485.1 mRNA upstream 66657 2528502 ~ 2531593 (+) True LOC122345384
XM_043239486.1 mRNA upstream 66657 2528575 ~ 2531593 (+) False LOC122345384
XM_043239536.1 mRNA upstream 321216 2270213 ~ 2277034 (+) True LOC122345419
XM_043240235.1 mRNA downstream 39517 2639156 ~ 2649361 (+) True LOC122345783
XM_043240245.1 mRNA downstream 117374 2717013 ~ 2725424 (+) True LOC122345789
XM_043239008.1 mRNA downstream 159716 2759355 ~ 2795560 (+) False hk2
XM_043239007.1 mRNA downstream 159723 2759362 ~ 2812420 (+) True hk2
XM_043239006.1 mRNA downstream 159727 2759366 ~ 2811283 (+) False hk2
TU48185 other upstream 330056 2265145 ~ 2268194 (+) True G32706
TU48087 other upstream 579791 2010411 ~ 2018459 (+) False LOC122345711
TU48080 other upstream 692962 1901458 ~ 1905288 (+) False LOC122346050
TU48056 other upstream 755237 1835148 ~ 1843013 (+) True G32620
TU48046 other upstream 772136 1822654 ~ 1826114 (+) True G32611
TU48610 other downstream 1005547 3605186 ~ 4144396 (+) False G33015
TU48613 other downstream 1005547 3605186 ~ 4144396 (+) True G33015
TU48849 other downstream 2022868 4622507 ~ 4623060 (+) True G33174
TU49128 other downstream 3004694 5604333 ~ 5649885 (+) False G33355
TU49131 other downstream 3004694 5604333 ~ 5649885 (+) True G33355

Expression Profile