RNA id: XM_043240235.1


Basic Information

Item Value
RNA id XM_043240235.1
length 1731
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC122345783
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2627084 ~ 2649361 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCCGGAGACCTCGGTGAAATGGAGACGTCGCAGGAGCTTTTTTTCAACAGCAGCCTCCAGAGCGAATACGCGAACCACAGTAACATCACCAACCACACCAGCATCACCTACTACCCTTACTACCAGCACTCTCTCTCCGTGGCTGCCGTCCTGACCGTGGCCTACCTCTTCATTTTCCTGCTGTGCATGGTGGGAAACGGCTTGGTGTGTCTGATTGTGCTGGAGAACCGGCGGATGAGGACGGTCACCAACCTCTTCATCCTCAACCTGGCCGTGAGCGACCTTCTGGTGGGCGTCTTCTGCATCCCGACCACCCTGGTGGACAACCTCATTACAGGTAACCCGTTCACGAACACCGTGTGTAAGATGAGCGGTCTGGTGCAGGGCATGTCGGTCTCGGCCTCCGTCTTCACGCTGGTGGCCATCGCCGTGGACAGGTTTCGTTGCATCGTGTATCCCTTCCAGCCCAAACTGACCCTGCTGGTGGCCAAAGTGACCATAGTGATGATCTGGGGGCTCGCGGTGGTGATTATGTGTCCGTCGGCGGTCACTTTAACCGTGAAGAGAGTGGAGCACCACTACATGGTCCACGACGAAGACTACAACCACACATACCCTCTGTTCTCCTGCTTCGAGAACTGGGCCAGCCCACAGATGAGGAAGGTCTACACCACCGTCCTGTTCGCTCACATCTATCTCATCCCTCTCACGCTGATCACGCTCATGTACGGACGCATCGGGATCAAGCTCTACACCACCTCGGTCATCTCCGGGAACGACCAGCAGGAGAGCGCGCAGTCCCACCAGGAAGGAAGGCCGCTCATTTCCCAGAAGAAGATTAAAGTGATTAAGATGCTGAGCGTGGTGGCGCTTTTATTCACGCTCTCCTGGCTGCCTCTCTGGACTCTGATGCTCCTCACCGATTACGGCGGTCTTAACGAAGACGAGCTGGATCTTCTGAGCGGCTATGTGTTTCCGTTCGCTCACTGGCTGGCGTTTTCCAACTCCAGCGTCAACCCTATTATCTACGGCTACTATAATGAGAACTTCAAGCGGGGTTTTCAGGCGGTGTGCAGAACGCATTCGTGCTGCTGCGGCGGGGTGAAGACGAGGAGCAGACCGCGACGGAAGTCCAGAGGAGACGCGAGGGATCCCGCGGTCAGCTCTAATCCCTTGGCCTTTGGTGGAAGGAACCGGGTTTACACCGACGGAGACGTGAAGGACTCCAGGACCTGTCTGGAGCTGGAGCACAGGAGAACCATTCGACTCTGTAATAACTCGGTCTGCTCGGATGACACGGGATCCAGCGTGGGATCCGGGATTAAAGGGGCTATGAACCAGAAAGTGTTTCGGACGGAGGAGGCAGAGAAAATAAGCCCGGTCAGGGTGGGTAAAAACCAAGCCTGGGACCAGTAGATGGATTATTCAAGAGACTTTCCAGACCTTTCACTTAATCAGCAGGACGATTCGGGCCTAAACATGTCTTTTGTGAAAACTATTATCTTCAACGGTTTGACAGCACACGGGGTTCAATGctcacaacacaaacaaacaccaaaacaaGCTGCAAatacctgcacacacacacacacacacacacacacacacacacacacacacacacaaaatgagccatgtcttttgtttttgtgtatttggcaCCATTTGTATAAATCCATGGTTATTTGTGCATGGTTTAACTatagtaaacatttttattaaactaca

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008188 neuropeptide receptor activity molecular_function

KEGG:

id description
K08375 NPFFR2; neuropeptide FF receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48269 lncRNA upstream 29555 2608216 ~ 2609601 (+) True G32770
TU48244 lncRNA upstream 39517 2598250 ~ 2599639 (+) True G32749
TU48260 lncRNA upstream 59373 2578586 ~ 2579783 (+) True G32765
TU48229 lncRNA upstream 218325 2418377 ~ 2420831 (+) True G32737
TU48177 lncRNA upstream 395269 2243667 ~ 2243887 (+) True G32702
TU48303 lncRNA downstream 216805 2866166 ~ 2867373 (+) True G32798
TU48332 lncRNA downstream 298732 2948093 ~ 3021585 (+) False G32819
TU48326 lncRNA downstream 298762 2948123 ~ 3021816 (+) False G32819
TU48331 lncRNA downstream 298762 2948123 ~ 3024488 (+) False G32819
TU48327 lncRNA downstream 298977 2948338 ~ 3024488 (+) True G32819
XM_043239485.1 mRNA upstream 107563 2528502 ~ 2531593 (+) True LOC122345384
XM_043239486.1 mRNA upstream 107563 2528575 ~ 2531593 (+) False LOC122345384
XM_043239536.1 mRNA upstream 362122 2270213 ~ 2277034 (+) True LOC122345419
XM_043239538.1 mRNA upstream 362122 2270213 ~ 2277034 (+) False LOC122345419
XM_043239537.1 mRNA upstream 362122 2270486 ~ 2277034 (+) False LOC122345419
XM_043240245.1 mRNA downstream 67652 2717013 ~ 2725424 (+) True LOC122345789
XM_043239008.1 mRNA downstream 109994 2759355 ~ 2795560 (+) False hk2
XM_043239007.1 mRNA downstream 110001 2759362 ~ 2812420 (+) True hk2
XM_043239006.1 mRNA downstream 110005 2759366 ~ 2811283 (+) False hk2
XM_043239954.1 mRNA downstream 679439 3328800 ~ 3343070 (+) True tbx1
TU48185 other upstream 370962 2265145 ~ 2268194 (+) True G32706
TU48087 other upstream 620697 2010411 ~ 2018459 (+) False LOC122345711
TU48080 other upstream 733868 1901458 ~ 1905288 (+) False LOC122346050
TU48056 other upstream 796143 1835148 ~ 1843013 (+) True G32620
TU48046 other upstream 813042 1822654 ~ 1826114 (+) True G32611
TU48610 other downstream 955825 3605186 ~ 4144396 (+) False G33015
TU48613 other downstream 955825 3605186 ~ 4144396 (+) True G33015
TU48849 other downstream 1973146 4622507 ~ 4623060 (+) True G33174
TU49128 other downstream 2954972 5604333 ~ 5649885 (+) False G33355
TU49131 other downstream 2954972 5604333 ~ 5649885 (+) True G33355

Expression Profile