RNA id: TU48378


Basic Information

Item Value
RNA id TU48378
length 1013
RNA type TUCP
GC content 0.46
exon number 2
gene id G32857
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2496504 ~ 2554146 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaaatGTGTGGGAAGTAGGCTGTTGTTGTGGTGCCTGACGGGACGGAGGAGCTCTTTAGTGTACACTAGCGAGTGAAGTGTGTCTGAATGTACTGAAGGGTGATGTTAGATGCACCAAAAACTCATCCGATTGTTCTTCTTCACGTACGGAATGCTGCTGTTGGGtagttttgatcatttaaaacaaaatccaaaaaaaggATGTAGATAAAAAAAGGAGTTTAGATTTTGTGTGAGTTGTAGTTTTCTGAGAGCGTTGCAGCACGCTGTGTTTTGGGAGGgtgtatatagatatagatatattcaTGTGTGCTTGATTGTGACGTCACTGtccacagacagagagaaagggctcttcttcttcttcttcttcttcttcttcttgggAGGGCAGGGGTTGTACGCCTTTAGTATCGATATATGCTTTTTCCGGggtcttgtttttatttgttacgagtgtttaaaactaaaaaaagtgaACGTCCTTCTGGAGATTGTGTCTCGTTGGCGATCGGTGTCTTGAAGTGTCTCACTCCGAGTGAAGTAGACTCTGCTTTCTGTGCAgctccacctctctctctctctctctctctctctgtctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctgtctctctctctctctctgtctctctctctctctctctgtctctctctgtctctctctctctctctctctctctctctctctctctctctatctctctctctctctctctctctctctgtctctctctctctctctctgtctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctc

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251082.1 lncRNA downstream 60804 2433286 ~ 2435700 (-) True LOC122346060
TU48232 lncRNA downstream 71692 2422985 ~ 2424812 (-) True G32740
XR_006250936.1 lncRNA downstream 111803 2383907 ~ 2384701 (-) True LOC122344845
XR_006250939.1 lncRNA downstream 117109 2377967 ~ 2379395 (-) True LOC122344860
TU48218 lncRNA downstream 120841 2374002 ~ 2375663 (-) True G32727
TU48406 lncRNA upstream 98298 2652444 ~ 2728807 (-) True G32870
TU48421 lncRNA upstream 195813 2749959 ~ 2797599 (-) True G32881
TU48423 lncRNA upstream 211137 2765283 ~ 2766771 (-) True G32882
TU48425 lncRNA upstream 213633 2767779 ~ 2774190 (-) True G32883
TU48427 lncRNA upstream 215055 2769201 ~ 2770371 (-) True G32884
XM_043240773.1 mRNA downstream 78451 2385151 ~ 2418053 (-) True LOC122346100
XM_043240213.1 mRNA downstream 397323 2090152 ~ 2099181 (-) True LOC122345768
XM_043240718.1 mRNA downstream 406348 2087785 ~ 2090156 (-) True LOC122346063
XM_043238500.1 mRNA downstream 437771 2052705 ~ 2058733 (-) True LOC122344882
XM_043238158.1 mRNA downstream 473582 2020096 ~ 2022922 (-) True LOC122344636
XM_043240230.1 mRNA upstream 1330 2555476 ~ 2579803 (-) True mxd1
XM_043240229.1 mRNA upstream 1331 2555477 ~ 2579800 (-) False mxd1
XM_043238138.1 mRNA upstream 26402 2580548 ~ 2585452 (-) False snrnp27
XM_043238136.1 mRNA upstream 26402 2580548 ~ 2585441 (-) True snrnp27
XM_043238137.1 mRNA upstream 26402 2580548 ~ 2585438 (-) False snrnp27
TU48163 other downstream 473610 2020108 ~ 2022894 (-) False LOC122344636
TU48139 other downstream 528756 1966637 ~ 1967748 (-) False G32676
TU48140 other downstream 528756 1966637 ~ 1967748 (-) True G32676
TU47988 other downstream 802530 1674490 ~ 1693974 (-) False ypel1
XR_006250937.1 other downstream 1142090 1342606 ~ 1354414 (-) False lrrc74b
TU48396 other upstream 26402 2580548 ~ 2585426 (-) False snrnp27
XR_006250982.1 other upstream 33407 2587553 ~ 2605915 (-) False add2
TU48454 other upstream 381597 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other upstream 397316 2951462 ~ 2960177 (-) True G32908
TU48805 other upstream 1331279 3885425 ~ 3894475 (-) False piwil2

Expression Profile