RNA id: XM_043238136.1


Basic Information

Item Value
RNA id XM_043238136.1
length 857
RNA type mRNA
GC content 0.51
exon number 6
gene id snrnp27
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2580548 ~ 2585452 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTGTTCCGGACCGGTTTATGTGGCGCACAGTTGATGGCGGCCAGCAGACGTTTGTCTGTAAATTGTTGGTGAAGTATTGGTTTGTGAAGGTGCTGTTCGAAAGAAAAGCGTCTACTTCACAGCGATCCAGTCATGGGGAGAAGCAGGAGCCGAACACCGCCACGACGAGGTTTGAAAACAGAGAGACGGCGCTCGCGCTCGACGTCACGGGAACGCGAGAGGAGGCGCCGGGAGCGCGAAAGATCCCGATCACGTgacagagacaggcggaggtcgcGCTCGCGCTCGCCTCACAGACGCAGATCCAGGTCTCCCCGCCGCCATCGCTCCTCCTCGCTGTCTCCGGGGCGGCAGAAAGACAGACGGGATGACGACCGGAAGGAAGCCAAGGACAAACCGGCAAAGGTTCATCAGATATCAGCTGAGGACATGCAGGGAAAGACTGAGGAGGAAATCGAGATGATGAAACAGATGGGCTTCGGGTCCTTCGACAGCACTAAGGGCAAGAAGAAGGAGGGCTCTGATGCTGCGTTCGAGGTGAACGTGTCGCAAAAGAGAAAATACAGGCAATACATGAACAGGAAAGGTGGTTTCAACAGACCTTTGGATTTCATTGCTTGACGGAGCCGTCAGGAAGAACGTCTGAGCGACTTTGACACCTTTGTGATTAAACGTATATTCCCTTTTCATCCCgagtttatgtaaatatgtttttccaTCTGTGTTGTGTTTCAGTCGGTGGCTGTTATGTAATGAGTGCAGTTTCTAGTAGCTCGTTTTAGAAGGGTTTGACATTGtggatttttcattttgaaaacttttatttgaaagCGCTGAATAAATGGGGACTCTTGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12846 SNRNP27; U4/U6.U5 tri-snRNP-associated protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251082.1 lncRNA downstream 144848 2433286 ~ 2435700 (-) True LOC122346060
TU48232 lncRNA downstream 155736 2422985 ~ 2424812 (-) True G32740
XR_006250936.1 lncRNA downstream 195847 2383907 ~ 2384701 (-) True LOC122344845
XR_006250939.1 lncRNA downstream 201153 2377967 ~ 2379395 (-) True LOC122344860
TU48218 lncRNA downstream 204885 2374002 ~ 2375663 (-) True G32727
TU48406 lncRNA upstream 67003 2652444 ~ 2728807 (-) True G32870
TU48421 lncRNA upstream 164518 2749959 ~ 2797599 (-) True G32881
TU48423 lncRNA upstream 179842 2765283 ~ 2766771 (-) True G32882
TU48425 lncRNA upstream 182338 2767779 ~ 2774190 (-) True G32883
TU48427 lncRNA upstream 183760 2769201 ~ 2770371 (-) True G32884
XM_043240230.1 mRNA downstream 745 2555476 ~ 2579803 (-) True mxd1
XM_043240229.1 mRNA downstream 748 2555477 ~ 2579800 (-) False mxd1
XM_043240699.1 mRNA downstream 36974 2536025 ~ 2543574 (-) True zgc:65851
XM_043239484.1 mRNA downstream 53211 2524559 ~ 2527337 (-) True purba
XM_043240773.1 mRNA downstream 162495 2385151 ~ 2418053 (-) True LOC122346100
XM_043239244.1 mRNA upstream 1146 2586587 ~ 2605917 (-) True add2
XM_043239248.1 mRNA upstream 1146 2586587 ~ 2605916 (-) False add2
XM_043239247.1 mRNA upstream 1146 2586587 ~ 2601883 (-) False add2
XM_043239245.1 mRNA upstream 1146 2586587 ~ 2601840 (-) False add2
XM_043239249.1 mRNA upstream 1146 2586587 ~ 2599281 (-) False add2
TU48378 other downstream 26402 2496504 ~ 2554146 (-) True G32857
TU48163 other downstream 557654 2020108 ~ 2022894 (-) False LOC122344636
TU48139 other downstream 612800 1966637 ~ 1967748 (-) False G32676
TU48140 other downstream 612800 1966637 ~ 1967748 (-) True G32676
TU47988 other downstream 886574 1674490 ~ 1693974 (-) False ypel1
XR_006250982.1 other upstream 2112 2587553 ~ 2605915 (-) False add2
TU48454 other upstream 350302 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other upstream 366021 2951462 ~ 2960177 (-) True G32908
TU48805 other upstream 1299984 3885425 ~ 3894475 (-) False piwil2
TU48804 other upstream 1300109 3885550 ~ 3894475 (-) False piwil2

Expression Profile