RNA id: TU48461


Basic Information

Item Value
RNA id TU48461
length 224
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G32906
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2936481 ~ 2936938 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAGATGCGTTAGAACTAGCGGTGTGTTTTCATGTCACGCAGTAcacctacaaaaaaaaccctaaacatTTGTCTTAATGTCTTAAACATTAAAGGCCGTTAAAAGAAGTTTGTTTTTAAGTATAATCCAGGTGGTTTGGGGTTTCCCTCAGAGCGGAAGAACACCGCCGTTTTAACTCGCGAGCTCTTATCTTATGTCCTGGACTCGAGAATGGAGGTCACC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022402 cell cycle process biological_process
GO:0022607 cellular component assembly biological_process
GO:0010948 negative regulation of cell cycle process biological_process
GO:0006996 organelle organization biological_process
GO:0044770 cell cycle phase transition biological_process
GO:0051225 spindle assembly biological_process
GO:0007017 microtubule-based process biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0070925 organelle assembly biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:1901988 negative regulation of cell cycle phase transition biological_process
GO:1901991 negative regulation of mitotic cell cycle phase transition biological_process
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03030 DNA replication
ko03410 Base excision repair
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48421 lncRNA downstream 138882 2749959 ~ 2797599 (-) True G32881
TU48425 lncRNA downstream 162291 2767779 ~ 2774190 (-) True G32883
TU48427 lncRNA downstream 166110 2769201 ~ 2770371 (-) True G32884
TU48423 lncRNA downstream 169710 2765283 ~ 2766771 (-) True G32882
TU48406 lncRNA downstream 207674 2652444 ~ 2728807 (-) True G32870
XR_006251081.1 lncRNA upstream 11546 2948484 ~ 2950332 (-) True LOC122346059
TU48473 lncRNA upstream 45829 2982767 ~ 2984983 (-) True G32910
TU48477 lncRNA upstream 143969 3080907 ~ 3120371 (-) True G32914
TU48486 lncRNA upstream 238781 3175719 ~ 3176249 (-) True G32922
TU48580 lncRNA upstream 356668 3293606 ~ 3327241 (-) True G32999
XM_043240716.1 mRNA downstream 26099 2876309 ~ 2910382 (-) True kat6a
XM_043240521.1 mRNA downstream 61588 2866165 ~ 2874893 (-) True ap3m2
XM_043240515.1 mRNA downstream 70438 2824171 ~ 2866043 (-) True tet3
XM_043240518.1 mRNA downstream 81388 2824171 ~ 2855093 (-) False tet3
XM_043240517.1 mRNA downstream 81388 2824171 ~ 2855093 (-) False tet3
XM_043238144.1 mRNA upstream 63318 3000256 ~ 3012721 (-) False LOC122344624
XM_043238143.1 mRNA upstream 63318 3000256 ~ 3012721 (-) True LOC122344624
XM_043239626.1 mRNA upstream 85911 3022849 ~ 3089522 (-) True LOC122345463
XM_043238173.1 mRNA upstream 406621 3343559 ~ 3368707 (-) True gnb1l
XM_043238174.1 mRNA upstream 406622 3343560 ~ 3376526 (-) False gnb1l
XR_006250982.1 other downstream 330566 2587553 ~ 2605915 (-) False add2
TU48396 other downstream 351055 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 382335 2496504 ~ 2554146 (-) True G32857
TU48163 other downstream 913587 2020108 ~ 2022894 (-) False LOC122344636
TU48140 other downstream 968733 1966637 ~ 1967748 (-) True G32676
TU48464 other upstream 14524 2951462 ~ 2960177 (-) True G32908
TU48805 other upstream 948487 3885425 ~ 3894475 (-) False piwil2
TU48804 other upstream 948612 3885550 ~ 3894475 (-) False piwil2
TU48820 other upstream 1207989 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other upstream 1207989 4144927 ~ 4193081 (-) False LOC122346168

Expression Profile