RNA id: TU48464



Basic Information


Item Value
RNA id TU48464
length 902
RNA type TUCP
GC content 0.59
exon number 6
gene id G32908
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2951462 ~ 2960177 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gggggGACGTGGACGTGTCTGCGGTGTGTCAGTACCAGATCGGAGAGGTGAAAAACGTGTTCGACGGGCCGTATAAGGAGTACAGGGAGTCGTCTCAGCGCTGGGGCCGATTCACTGGCACCGTTCCCAGCCCTCGACCCGGAGCGTGCATCACGAACTTTGACCGAGAGAACGGCTACAACAGTTCTCTGCAGCTGCCCGACGCCACGCTGAACTTTGCCAAGAAGCATCCGCTGATGGAGGACCGGGCCGAAGCTCGCCCCCTGCTGCTCACGAAAGGCATCAACTTCACCCGACTAGCAGTGGACAGAGTGAGCTCGCTGGACCAGAGACCCTACAACATGCTCTTCATAGGCACAGCGGATGGATGGCTCCAGCGTGTGGTGATTCTGGGTTCAGAAGCTCATGTGATAGAAGAGATCCAGCTGTTTGATCGGCAGCAGCCGGTGGACAGCCTCACCATCTCACACGGCAAAAAGTATTTGTACATTGGCTCGCGCTCCGAGGTTCTTCAGCTGCCCTTGGCAAACTGCAGCCGCTACCATTCACAGCCAGACTGCCTTCTGTCCCGAGATCCATACTGCGCCTGGGACAGCGAGGGACGCGCTTGTGTCCGCATCGACCTCCACCGCGGCTCCACATCCACGCTCTCACAGGACCTCATGCTGGAGAGGTTCAGCCGAGGAAAAGCCAAGTTTGATAAGCCTTTCTCCATCCCCAGTCCAGatcATTCTAGGTTGCGAAATGTGACTGTGGTTGTTGGGTCAGATCTGGTTTTGCCCTGCCATCTGGTTTCCAACTTGGCCCAGCCTTTCTGGGAGCTCAACGAACGTGAGCTGGCCCTGGTGGAAGGCGGAGCCCGGGGCCCCGGTCGACCGAGCCCTCCGCGCCCTCGTCATCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006251081.1 lncRNA downstream 1130 2948484 ~ 2950332 (-) True LOC122346059
TU48461 lncRNA downstream 14524 2936481 ~ 2936938 (-) True G32906
TU48421 lncRNA downstream 153863 2749959 ~ 2797599 (-) True G32881
TU48425 lncRNA downstream 177272 2767779 ~ 2774190 (-) True G32883
TU48427 lncRNA downstream 181091 2769201 ~ 2770371 (-) True G32884
TU48473 lncRNA upstream 22590 2982767 ~ 2984983 (-) True G32910
TU48477 lncRNA upstream 120730 3080907 ~ 3120371 (-) True G32914
TU48486 lncRNA upstream 215542 3175719 ~ 3176249 (-) True G32922
TU48580 lncRNA upstream 333429 3293606 ~ 3327241 (-) True G32999
TU48579 lncRNA upstream 380422 3340599 ~ 3343240 (-) True G32998
XM_043240716.1 mRNA downstream 41080 2876309 ~ 2910382 (-) True kat6a
XM_043240521.1 mRNA downstream 76569 2866165 ~ 2874893 (-) True ap3m2
XM_043240516.1 mRNA downstream 106178 2824171 ~ 2845284 (-) False tet3
XM_043238144.1 mRNA upstream 40079 3000256 ~ 3012721 (-) False LOC122344624
XM_043238143.1 mRNA upstream 40079 3000256 ~ 3012721 (-) True LOC122344624
XM_043239626.1 mRNA upstream 62672 3022849 ~ 3089522 (-) True LOC122345463
XM_043238173.1 mRNA upstream 383382 3343559 ~ 3368707 (-) True gnb1l
XM_043238174.1 mRNA upstream 383383 3343560 ~ 3376526 (-) False gnb1l
XR_006250982.1 other downstream 345547 2587553 ~ 2605915 (-) False add2
TU48396 other downstream 366036 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 397316 2496504 ~ 2554146 (-) True G32857
TU48163 other downstream 928568 2020108 ~ 2022894 (-) False LOC122344636
TU48140 other downstream 983714 1966637 ~ 1967748 (-) True G32676
TU48805 other upstream 925248 3885425 ~ 3894475 (-) False piwil2
TU48804 other upstream 925373 3885550 ~ 3894475 (-) False piwil2
TU48820 other upstream 1184750 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other upstream 1184750 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other upstream 1184750 4144927 ~ 4193081 (-) False LOC122346168

Expression Profile