RNA id: TU48579


Basic Information

Item Value
RNA id TU48579
length 2642
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G32998
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3340599 ~ 3343240 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gttgaGGTCTTGGGTAAGGACAGGAACCAAGCGTCGATTTTCATTCAGAACcggtttcattttctttaaaacattgaaatagATCATTTGAATCACATTTGGTTCTGTTAACAATTTTTGCATTGGCTCTCTTGGTCAGTTAAACAAAACCGCATGACCATGTAGtttgcagtttatatatatatatatatatatatatatatatatatatagccaaagCTGAGTTTTAAAGACCGCTTTACCATTTCTTACAAACTGATAGTTGCAGATTACCGACTTTATTTACGTTCTTGATCTTGGTGCTAATATGTTTTTTGCATGAAAGCACTTAAATTAGTGGCCGAGAATATAGAATACGTTTTCGATATAATGAAGTCTTGTATTTGCGTAAAAGGTTGTCAAGTAAGGACAGAAATCAATAATCAGTTTAATTTATATCtagcaggttgcattgttttatgTCAGAATGGAAGATTCGAATCGCTTTAGTTtctgttaaaatgaatgcaccgtgcattttttttccttacatTAGTTTGCGAGATCCTTAAAACCGATTGTCGCCAATCGCTGACTTTTTTCACGGAAGCTGCTAAGTGATTGGCTGTAACTCGGCCTCGTTTAGAAAGCCGTCGCCGTTCTTATTGGTCAAATGCTTCAAAATCGATCGGAACGGCAGCTAATTTAAACGCTCTCCATCGCCGTGTTTGGTTGCGGTTTTCCACAAGGCCGGTCGTTAGCTGAAGGTGTTTTATCGTCTTAAACCGTCCCCTGCGATCTGTTTGCTTTACCCCAGGCTGATGTGCTTCAGTAGGTGTGTATTTGCTCTTAAAGTCGCACCTGAGTGGCAAAGCAATCCGCCGCTGTTTTCCCAAATCTGCCTCCGAGTTTGAGATTGCCCTCTGGACTGACCTGCATACATCACGCGGGGTTAATCACGGGGGCTCGGCTCCGCGGACAGCCCTGTTTGTTAGAAAGATTCATTGAGCGGGATTGGTTTCGTTCCTCCCTTCAAGCGCACGAGCTGATGAAGGCAGCTCTATTTTCAGCCTAAAGACAAGGCCGACCTCTGCGTTCGGATGTGGCCCGAAAGACGAACTAGTTACTTTGGCGTTTATTGCACAACGTGGCTCGCTCGCCAGagcgctttttctttttttatttgtgcttcTTGCATCGTTAACACCGTTTCCAGATTGGAGTTGCAGCAACGAACCAGTTCCGTGACTTTACCAATGCTTTTTGGTTCACAAAACAATACACGGCGATCGGTTTAGTTTGACTCTCGACTTTAACGAACTGATTCTTTTGGTGAGTCTTACGTTAAGCCATGaccagagttttttttttattccctaATAAATGCCTTGCTGTTGAAAAGTGTCCGGTAACGCTTTATATTGATAACTCACTCACTAACGATAAGCAACTACGTGTCACCTAGCGCTCATCAGCGTATTAGTAGACTAATATCTTTATTTCGATGAGTCCACTGCacactgactatcagaaacttgaAAGTATATGTCGatttattctactaaccctaaaccaaacataagagagttagtagacatgtagttcaAATTAATGAgtattagttgacatgtagttacataGTTATAGTTAGCAGACTGTCTAAactggactatcaaaataaagtgcaaccctACTTTAATAAACTAAACCGTTTGATTCGAACCAAACCTGTTGTTTTTCAAACgatgttttattttgcagtaacTCGACCCGATTATCGAAAACAGACACGTATATTAGTCGAGTTCGAAAGTGGATCTTTTTGTCAGCGTCCGCGGTAATAATAGCCGTCCTCGGTACTAAGCTAAATGGGATTTCATGCAACTTCAAACGGCCCACAGCCGCTCTGCCCCATAAAGCACGCGTCCCCGGGGACCGACCCAGACTGGAATATCTCATCAGACGGTACAGGAAGCTCGGGGAACTTAGAGGCCATCcttttaaaggaaaaacatcAGCGGGCGAGTCGCCGGCCGGAGAGGGGAAGACAAAACAGTTCACTTCACAGTCCGCCCGGCCGTGTACCTCTGTCCGTGACCTCTGATTGGTAATCGCTTCCTACTTTTATAGACTCCACAGGGGGGCACAACAAAGCCGTGCCGGGTTGAAGACTTCGGCTAATACCTCCCAAGTCAATAATAGATCACTTAAGCGGTCGGTATAAGCAGAACCTCGACGCGGGCCGCTGACGAAAACCTGCGGCTTTCCGAACGGCAGACGCGCGCCTGTCTGTTGCGccggaggtcagaggtcacccgGCCAGCTCACGGATCCCGCGtgccgtgtgtttctggatccTCTGGGTAAGGCCGGATGAATGGATGTTAGGTTTTGGAAACTAGCAATAATCGCAGGTAATCACGGTCTGAGGAAATGGGCCTCTGAATGAGAGAAACCCAACGCCGGCCGTGTTGcagtaaattatttacatgttgGCAAGCTCGCTCGGAATGAAACCGTTTCTGTTGTCCGAGATAAGCGCGCCGGTGATTTGTTTTCGTACGCGCCGCTGGAAACGCGGGAGAATGTGAAACTGGGGGTAAACGTCTTCACATGGTTGgtccacctttttttttttttttttctggctttgGACTTGCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48580 lncRNA downstream 13358 3293606 ~ 3327241 (-) True G32999
TU48486 lncRNA downstream 164350 3175719 ~ 3176249 (-) True G32922
TU48477 lncRNA downstream 220228 3080907 ~ 3120371 (-) True G32914
TU48473 lncRNA downstream 355616 2982767 ~ 2984983 (-) True G32910
XR_006251081.1 lncRNA downstream 390267 2948484 ~ 2950332 (-) True LOC122346059
TU48594 lncRNA upstream 45044 3388284 ~ 3390379 (-) True G33008
TU48755 lncRNA upstream 264227 3607467 ~ 4098373 (-) True G33109
TU48765 lncRNA upstream 274697 3617937 ~ 3619054 (-) True G33114
TU48777 lncRNA upstream 305226 3648466 ~ 3652888 (-) True G33124
TU48785 lncRNA upstream 401435 3744675 ~ 3749016 (-) True coq5
XM_043239626.1 mRNA downstream 251077 3022849 ~ 3089522 (-) True LOC122345463
XM_043238144.1 mRNA downstream 327878 3000256 ~ 3012721 (-) False LOC122344624
XM_043238143.1 mRNA downstream 327878 3000256 ~ 3012721 (-) True LOC122344624
XM_043240716.1 mRNA downstream 430217 2876309 ~ 2910382 (-) True kat6a
XM_043240521.1 mRNA downstream 465706 2866165 ~ 2874893 (-) True ap3m2
XM_043238173.1 mRNA upstream 319 3343559 ~ 3368707 (-) True gnb1l
XM_043238174.1 mRNA upstream 320 3343560 ~ 3376526 (-) False gnb1l
XM_043240530.1 mRNA upstream 47754 3390994 ~ 3417708 (-) False txnrd2.2
XM_043240531.1 mRNA upstream 55768 3399008 ~ 3417727 (-) True txnrd2.2
XM_043240533.1 mRNA upstream 59783 3403023 ~ 3417741 (-) False txnrd2.2
TU48454 other downstream 327780 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other downstream 380422 2951462 ~ 2960177 (-) True G32908
XR_006250982.1 other downstream 734684 2587553 ~ 2605915 (-) False add2
TU48396 other downstream 755173 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 786453 2496504 ~ 2554146 (-) True G32857
TU48805 other upstream 542185 3885425 ~ 3894475 (-) False piwil2
TU48804 other upstream 542310 3885550 ~ 3894475 (-) False piwil2
TU48820 other upstream 801687 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other upstream 801687 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other upstream 801687 4144927 ~ 4193081 (-) False LOC122346168

Expression Profile