RNA id: TU48785


Basic Information

Item Value
RNA id TU48785
length 3125
lncRNA type sense_over
GC content 0.47
exon number 3
gene id coq5
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3744675 ~ 3752764 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaatatttattggttttaactataataaccctacaatacactttttattgcagtagtttttacatttatttttgcatgaatttTTCTTTTAGAGGGGGTGTATATGGTTTATACTGTGTAacttgttgctttttttttttttttttttttggacaggcTATATGATGCATATAGTTTTCAGATGATCCCTGTGTTGGGCGAAGTAATTGCTGGAGACTGGAAATCATATCAGTATTTGGTGGAGAGCATCCGAAAGTTCCCAGACCAGGAAACATTCAAGGAAATGATCGAGGACGCTGGCTTCTTCTGTGTCCAGTATTTTAACCTGACCGGAGGAATCGTCGCCATTCATTCAGGATTCAAGCTCTGAGCGTCGCCTTCTCTCCAAATGAACTCTGACGAGAAAGAGCGGAGGACTTTAACTTGAACACCGTTCGACCGGACACCGGGATCTCGGCATGAAATGTCCTTTTTGTTCGCGTGTTTGTGTTGGAAACACTTTCGCTCTCTGGCAGACATTAAAACGTTCTTTAAAGCGTTGAGGGTTCGATTGAGCTGTTGAAAATGGATTAATTTTAAAGGCTGGTGAAATGCGAGCGCTGTTATTTTTACAAGATGGACAATGTGTTTGGGTTTTGCTCGGAGGGAAGCACATGCTGACCTAGTAaaagattaaatgcatttcGTCTTTGATCCCGTCGCAAAATGCACGGCCCGTAATGAGCGCTCGTTCGGAATCTGCATCGAATTTCCACACACTTCTGGATTTGGTTCACAGCATGAAAAACATCCCTGAGACGTGTTATGCTTGGCGAAAATGAAACAGTCAAATGTGcgtttttactttaataaaaccatatattttttaaaaaaaaaaaaaaaaaaaaaaaaagcttttgtattGGTCTGTTTCTGTACTAAAACGACAAAGGCCCTGAGAAGTGACGAGAAAGAGGGAGGCGTACATATTCCTAGTTACATTTTCAGAGAAGTTACCTCAGCACCTGTTGTGCACTCCCTCAAGATGCAGTGTCCCATTTTGGTTCTTATTTCTCTAAATGAAATCCTTTAATTGACCGAGATGTACGACTTTGCGCTGCTCACATGCATGCGGTTCTCAACGAAATGTGTGTAATCATTCAAATCATCGTGGCTAATAACACGGAGCTCGGGCATAATCCAAATCGTCATAAAAGCGTAAAAAGTTAGTCGTATACATTTACAGACATTTTCCCTGGTCCTAATCCAGTCAAGAAAGAAGCATATTATGATGATGCTCCATATGACTCACGTTTCTGAGTTTGTGTTGCACGAGGAAAATATAGCTTTGTACTTTCGCCTTCTATAAATATTGAGTTGATGTGACAGATTCCGAAGGCCACAGGAATGAACAAGAAaaccaaagaataaaaaaactaaatcttaatTTGAAACTCAAACCCTTTCTGGTAAGTACACTTTTATCAACAAAACCGTTAAAGAGCTtaacatttattgattttcaaGAGCTTGCGCTGCGTTGAGGGCTTCCTATCAGAGCCCCGATCCATCAAACGACGCTTTGCCGCCCCCTTGTGCTTCAGACGAGGGAAACAGTGCTCTTGCCTCTTCAACTTGACCTCTACATTGTCCTGAGGTGAAAAACAAGTCACAATGCTCCTCAGAAgttctctcctccctctctacAGGAAGTCTAGGAGGGAGCAAACTTGTTTGTGGTTCTGGACCCAAGCCTAATTCACAGTCTGTATCCTCAGGAATTATGGGTATCCGCTGCGCTAGCTCGCAGCATCCCTGTCCCATGCAGCCGTCGCTGTCCGTCTGGGCGTACTGTACATTAACCGAACAATCTTCTGCGTAATGACTAGCGCTTCCTCTGTGCACAGTCATCTCTGTGTAGAAGCAGCATGGCAGGCCGTCGTAGCTAACGTGATCCGGAGACGGAAGCTGCTCTGTGCTAACGCTATAAAAGTTTGGTGGGGAAGACTCGGCGGCCCACCTGCAGGGTCCATCTGCTTCCTTACCTTTGCGCTCTAAGTTTAATTTGGGTACCTCGAAACAGCAGTTGCAAGCTACCCCTTGCTCTCCGCAAGGCTTCACAGAGCCGTGGCTCCTTTCTGCCACGGCGCCCTCTAGGGGCCCGGCTGAGGTAGTGCTAGTAAGTTCCCTGGTTTCCACCGAAGAGTGGCTACTACAGTTCGGCTCCAGGCTGCAGTTGGACAACTGGTCCCCAGAACCGTAACATGCTCCCACCGGAGGCTGTAGGCAGTCTATCATACTAGATACTGGGGCAGAAGTATCATCAGTTTGAGGGGTGGCAGCAAACGCCTCCCCGGCCGAACCCCGGCACGGACTCTTACTGCGGTACACATAGGGATCGTAATCGCTGCTTAGCGAACTCCGGAAGGTCGAGCAACTCCCATACACTCCCTGGTTGCTGACTTCCGTGCAATCCAACATGGAGTCGCTGGAAGAGCAGTGGCACTGACccgagctgctgctgctgtcgcTTCCGGGACAGTCCGCAAGATATCCGCTACACACAGAGCGATGCCCGTGATAACAACTAAGTCCCGAGGAGCTTCCAGAGTCGCCCAGTCGGGAAGAGGAAGCCGGGGCCATGTGCACCACAGTAGGATACAAAAGTCCTGGCTGGAAGGGTCGACTGTGACCTTTGTGGAGTCCGTTACCTTGCTGACCTTCAGCTTGCGGAAAGGTCAAGCCCTGGAAATAGTAGTGCTGGTACATGGTCTCGTATTGGGAATAGCAGGCGGCACGAGAAAAATTGCGGCCGTGGAATTTGGGGCGTTTGAAAGTGTGGGTTTGCGGATAAGCGCGGTGCTCCAGGCCGCAATGGTGCGGGTTTAGCGTGTGCTCCAAGTGGAGAGCAGGGTAACCCCGTATGAAGGAAGACTGTGGAGGATAGAGGCCTTGCTCAGGGTGTTGGTCCACTGTAAGAACAGTGATGGGGTTTCCATGGGGGTCCATGCTGGTCCGAGTAGGGAAGGCCGTCACTTGCCCAGCTCTGTGCACCCTTCCTGGATAATGAACAGGGAGGACGACTCTCTGCTGGCGGCTGTGGACTGGGTTTCCTGGATCAAGACAAACAGCGCCTGGGTTTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48777 lncRNA downstream 91787 3648466 ~ 3652888 (-) True G33124
TU48765 lncRNA downstream 125621 3617937 ~ 3619054 (-) True G33114
TU48594 lncRNA downstream 354296 3388284 ~ 3390379 (-) True G33008
TU48579 lncRNA downstream 401435 3340599 ~ 3343240 (-) True G32998
TU48580 lncRNA downstream 417434 3293606 ~ 3327241 (-) True G32999
TU48808 lncRNA upstream 149575 3898591 ~ 3904546 (-) True G33140
XR_006250999.1 lncRNA upstream 218840 3967856 ~ 3968964 (-) True LOC122345413
XR_006250997.1 lncRNA upstream 301766 4050782 ~ 4051472 (-) False LOC122345411
TU48810 lncRNA upstream 301899 4050915 ~ 4051469 (-) True LOC122345411
TU49028 lncRNA upstream 1110983 4859999 ~ 4902402 (-) True G33300
XM_043240173.1 mRNA downstream 81765 3659704 ~ 3662910 (-) True xbp1
XM_043239572.1 mRNA downstream 122271 3619178 ~ 3622404 (-) True si:dkey-1k23.3
XM_043238403.1 mRNA downstream 250482 3422884 ~ 3494193 (-) True taok3a
XM_043240533.1 mRNA downstream 326934 3403023 ~ 3417741 (-) False txnrd2.2
XM_043240531.1 mRNA downstream 326948 3399008 ~ 3417727 (-) True txnrd2.2
XM_043240848.1 mRNA upstream 4963 3753979 ~ 3809696 (-) False kremen1
XM_043240847.1 mRNA upstream 4963 3753979 ~ 3809694 (-) True kremen1
XM_043238280.1 mRNA upstream 73102 3822118 ~ 3847170 (-) True susd2
XM_043239162.1 mRNA upstream 100477 3849493 ~ 3873889 (-) True slc39a14
XM_043239160.1 mRNA upstream 100477 3849493 ~ 3873888 (-) False slc39a14
TU48454 other downstream 731856 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other downstream 784498 2951462 ~ 2960177 (-) True G32908
XR_006250982.1 other downstream 1138760 2587553 ~ 2605915 (-) False add2
TU48396 other downstream 1159249 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 1190529 2496504 ~ 2554146 (-) True G32857
TU48805 other upstream 136409 3885425 ~ 3894475 (-) False piwil2
TU48804 other upstream 136534 3885550 ~ 3894475 (-) False piwil2
TU48820 other upstream 395911 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other upstream 395911 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other upstream 395911 4144927 ~ 4193081 (-) False LOC122346168

Expression Profile