RNA id: TU48805



Basic Information


Item Value
RNA id TU48805
length 1016
RNA type TUCP
GC content 0.53
exon number 10
gene id piwil2
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3878650 ~ 3898578 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCCTTCCAGTCCGCTGCCCCCGTCTCTGAAGAAGCACCGGTTCCTCCAGGAACGCCTCCGAAAGTTGAAGTGAAAATTGAGACAGTGAAGGAGCCTCTGCAGAAAACCGGAACAAAAGGCAGTCCTGTATCCATCGGGTCAAACTACATCCCCATCTGCTGCAAAAATGAAGCTGTGTTTCAGTACCATGTTACTTTCACGCCGAACATTGAGTCTCTGAGTATGCGCCGGTATGATGAAGGAGCACCGGTCTGACGGGGGAGGTGGTGGCCTTTGATGGATCCATCCTCTATCTGCCGAAACGTCTTGAAGAGGTTGTTCATCTTAAAGCCGAGAGGAAAACCGACAATCAAGAGATCGACATTAAGATCCAGCTGACGAAGATTCTGCCGCCCAGCTCTGATCTGTGCATCCCGTTCTACAACGTGGTCCTAAGGAGAGTGATGAAATTACTGGGGCTGAAGCTGGTGGGCAGAAACCATTACGACCCCAACGCCGTTGTGATTCTCGGCAAACACAGGCTTCAGGTGTGGCCTGGATACTCCACCAGCATCAAGCACACCGATGGAGGCCTCTACCTCGTCGTGGACGTCTCGCATAAGGTGCTGCGAAACGACTCGGTGCTCGATGTCATGAATCTGATTTACCAGGGAAGCCGTGAGAGCTTTCAGGACGAGTGCACGAAGGAGTTTGTGGGCTCGATCGTCATCACGCGCTATAACAACCGCACTTACCGTATCGACGACATCGAGTGGTCCAAGTCTCCCAAAGACACCTTCACCTTGGCTGATGGGACCGTCACCACGTTTGTGGATTACTACAGGAAGAACTATGGCATCGCCGTAAAGGAGCTGGACCAACCGCTGCTCATCCATCGTCCCAAAGAGAGGTCCAGACCTGGAGGAAAGGTCATGACGGGTGAAATCCTGCTGCTCCCGGAGCTCTCCTTCATGACCGGCATCCCCGAGAAGATGAGGAAGGACTTCAGAGCCATGAGGGATCTGGCTGTGCACATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU48785 lncRNA downstream 136409 3744675 ~ 3749016 (-) True coq5
TU48784 lncRNA downstream 136409 3747616 ~ 3749016 (-) False coq5
TU48777 lncRNA downstream 232537 3648466 ~ 3652888 (-) True G33124
TU48765 lncRNA downstream 266371 3617937 ~ 3619054 (-) True G33114
TU48594 lncRNA downstream 495046 3388284 ~ 3390379 (-) True G33008
TU48808 lncRNA upstream 4116 3898591 ~ 3904546 (-) True G33140
XR_006250999.1 lncRNA upstream 73381 3967856 ~ 3968964 (-) True LOC122345413
XR_006250997.1 lncRNA upstream 156307 4050782 ~ 4051472 (-) False LOC122345411
TU48810 lncRNA upstream 156440 4050915 ~ 4051469 (-) True LOC122345411
TU49028 lncRNA upstream 965524 4859999 ~ 4902402 (-) True G33300
XM_043239162.1 mRNA downstream 11536 3849493 ~ 3873889 (-) True slc39a14
XM_043239160.1 mRNA downstream 11537 3849493 ~ 3873888 (-) False slc39a14
XM_043239161.1 mRNA downstream 11537 3849493 ~ 3873888 (-) False slc39a14
XM_043239163.1 mRNA downstream 18851 3849493 ~ 3866574 (-) False slc39a14
XM_043238280.1 mRNA downstream 38255 3822118 ~ 3847170 (-) True susd2
XM_043239522.1 mRNA upstream 243056 4137531 ~ 4141903 (-) True LOC122345410
XM_043240860.1 mRNA upstream 250381 4144856 ~ 4192823 (-) False LOC122346168
XM_043239521.1 mRNA upstream 393324 4287799 ~ 4319735 (-) True LOC122345409
XM_043240871.1 mRNA upstream 455752 4350227 ~ 4370478 (-) True LOC122346182
XM_043238426.1 mRNA upstream 562344 4456819 ~ 4462417 (-) False atad1a
TU48454 other downstream 872606 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other downstream 925248 2951462 ~ 2960177 (-) True G32908
XR_006250982.1 other downstream 1279510 2587553 ~ 2605915 (-) False add2
TU48396 other downstream 1299999 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 1331279 2496504 ~ 2554146 (-) True G32857
TU48820 other upstream 250452 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other upstream 250452 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other upstream 250452 4144927 ~ 4193081 (-) False LOC122346168
TU48850 other upstream 728015 4622490 ~ 4623058 (-) True G33175
XR_006251120.1 other upstream 1536789 5431264 ~ 5431394 (-) True LOC122346225

Expression Profile