RNA id: XM_043240840.1


Basic Information

Item Value
RNA id XM_043240840.1
length 2469
RNA type mRNA
GC content 0.55
exon number 18
gene id piwil2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3878650 ~ 3898578 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCCGTGGATGCCGTCTGCAGGAGATCAGGGCCGTCGCCCGACCAGCCCTCATTGGGACGAGCCAGAGGTCTGGTTCTGCCTAAAGATGAACCTCTTCCCGGACAGTAGAGTACCTGGAGAAGTGCCTGTACGAGGTGTGCGATTACCGACGGACGCCGGAGGTTTCGGAAGAGCCCGAGGGTTTCTGCTGCCCGGTTTTGGGATGGGCAGAGGGGGCTCCTGTGGGGCCTGTGCCTCGCCGGACATCAAAAAAGCAGGCGTCGCACGGGAGAAGAGGCCTGTGCTGCAAACAGAGtTTCCTGGCAGAGGATTTGTTGGCGTAGGCGAGCCGTTGCCTCATATAGGGGTAGTTCTCCCGGTGCGGCCCAGGTCGTCCTTCCAGTCCGCTGCCCCCGTCTCTGAAGAAGCACCGGTTCCTCCAGGAACGCCTCCGAAAGTTGAAGTGAAAATTGAGACAGAGCCTCTGCAGAAAACCGGAACAAAAGGCAGTCCTGTATCCATCGGGTCAAACTACATCCCCATCTGCTGCAAAAATGAAGCTGTGTTTCAGTACCATGTTACTTTCACGAGCACCGGTCTGACGGGGGAGGTGGTGGCCTTTGATGGATCCATCCTCTATCTGCCGAAACGTCTTGAAGAGGTTGTTCATCTTAAAGCCGAGAGGAAAACCGACAATCAAGAGATCGACATTAAGATCCAGCTGACGAAGATTCTGCCGCCCAGCTCTGATCTGTGCATCCCGTTCTACAACGTGGTCCTAAGGAGAGTGATGAAATTACTGGGGCTGAAGCTGGTGGGCAGAAACCATTACGACCCCAACGCCGTTGTGATTCTCGGCAAACACAGGCTTCAGGTGTGGCCTGGATACTCCACCAGCATCAAGCACACCGATGGAGGCCTCTACCTCGTCGTGGACGTCTCGCATAAGGTGCTGCGAAACGACTCGGTGCTCGATGTCATGAATCTGATTTACCAGGGAAGCCGTGAGAGCTTTCAGGACGAGTGCACGAAGGAGTTTGTGGGCTCGATCGTCATCACGCGCTATAACAACCGCACTTACCGTATCGACGACATCGAGTGGTCCAAGTCTCCCAAAGACACCTTCACCTTGGCTGATGGGACCGTCACCACGTTTGTGGATTACTACAGGAAGAACTATGGCATCGCCGTAAAGGAGCTGGACCAACCGCTGCTCATCCATCGTCCCAAAGAGAGGTCCAGACCTGGAGGAAAGGTCATGACGGGTGAAATCCTGCTGCTCCCGGAGCTCTCCTTCATGACCGGCATCCCCGAGAAGATGAGGAAGGACTTCAGAGCCATGAGGGTACAAATCAGCGACAGGGTCGGGATCTGGCTGTGCACATCGGCGTCAGCCGAGCAGATTCTAGTGACTCAAGGAAGAACTCTGCCCAACGAGACCATCTGCTTGCATTCAGCTTCTTTTGTGACGTCTCCGGCGGTAGACTGGTCCAGAGAGGTGGTTCGAGACCCCTCTATCAGCACCGTTCCTCTGAACTGCTGGGCTGTTTTCTATCCCCGGCGGGCGACCGATCAGGCAGAGGAGCTGGTGACTACTTTTACTAAGGTGGCCGGACCAATGGGCATCAAAATTGAGCGGCCCATCCGCGTGGAGCTACGGGACGATCGAACAGAGACCTTCATCAAGAGCATTCACTCTCAACTCACCAGCGAGCCCCGTGTGCAGCTGGTCGTGTGCATTATGACCGGAAACAGAGACGACCTGTACAGCGCCATCAAGAAGCTCTGCTGCATCCAGAGTCCTGTACCTTCACAGGCCATCAACGTTCGGACCATCTCTCAGCCACAGAAGCTCCGCAGCATCGCTCAGAAGATCCTTCTGCAGATTAACTGCAAGCTGGGAGGAGAGCTGTGGACGGTGAACGTTCCTCTGAAATATCTGATGGTGATTGGGGTGGATGTTCACCATGATGTAAGCAAGAAAAGCAGATCTGTCATGGGCTTTGTGGCAAGTCTCAACAGCATGCTGACCAAGTGGTACTCCAGGGTTACCTTCCAGATGCCTCACGAGGAGATAATCAACGGCTTCAGGGTCTGTCTGCTGGCGGCCCTGCAGAAATACTACGAGGTATTTCTATCAACTGGTCAATCGATTCGGTTAAAAGCCACAGGGCGCGTTTCAGCCATTTCTCGCCGACAGGTGAACCACACCTTCCCCGAGAAGATCGTCATCTATCGCGACGGCGTGTCTGACGGACAGCTCAAGACGGTGGAGCTTTACGAGATCCCTCAGGTCCTGAAGTGCTTCGAGACCATCCCGAACTACGATCCGAAGCTGGCTTTCATCGTGGTGCAGAAGAGGATCAGCACCACCCTGTACTCCTGCGGATCTGACCAGTTCGGCACGCCCTCGCCGGGAACCGTCCTGGACCACACCGTCACCAACAGAGACTGGTCGGTGTCCAAGAGCCGGCTTCAGAGCGACTGA

Function

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0030718 germ-line stem cell population maintenance biological_process
GO:0043046 DNA methylation involved in gamete generation biological_process
GO:0007275 multicellular organism development biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0000966 RNA 5'-end processing biological_process
GO:0010991 negative regulation of SMAD protein complex assembly biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0071546 pi-body cellular_component
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0034584 piRNA binding molecular_function

KEGG:

id description
K02156 AUB, PIWI; aubergine

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48785 lncRNA downstream 129634 3744675 ~ 3749016 (-) True coq5
TU48784 lncRNA downstream 129634 3747616 ~ 3749016 (-) False coq5
TU48777 lncRNA downstream 225762 3648466 ~ 3652888 (-) True G33124
TU48765 lncRNA downstream 259596 3617937 ~ 3619054 (-) True G33114
TU48594 lncRNA downstream 488271 3388284 ~ 3390379 (-) True G33008
TU48808 lncRNA upstream 13 3898591 ~ 3904546 (-) True G33140
XR_006250999.1 lncRNA upstream 69278 3967856 ~ 3968964 (-) True LOC122345413
XR_006250997.1 lncRNA upstream 152204 4050782 ~ 4051472 (-) False LOC122345411
TU48810 lncRNA upstream 152337 4050915 ~ 4051469 (-) True LOC122345411
TU49028 lncRNA upstream 961421 4859999 ~ 4902402 (-) True G33300
XM_043239162.1 mRNA downstream 4761 3849493 ~ 3873889 (-) True slc39a14
XM_043239160.1 mRNA downstream 4762 3849493 ~ 3873888 (-) False slc39a14
XM_043239161.1 mRNA downstream 4762 3849493 ~ 3873888 (-) False slc39a14
XM_043239163.1 mRNA downstream 12076 3849493 ~ 3866574 (-) False slc39a14
XM_043238280.1 mRNA downstream 31480 3822118 ~ 3847170 (-) True susd2
XM_043239522.1 mRNA upstream 238953 4137531 ~ 4141903 (-) True LOC122345410
XM_043240860.1 mRNA upstream 246278 4144856 ~ 4192823 (-) False LOC122346168
XM_043239521.1 mRNA upstream 389221 4287799 ~ 4319735 (-) True LOC122345409
XM_043240871.1 mRNA upstream 451649 4350227 ~ 4370478 (-) True LOC122346182
XM_043238426.1 mRNA upstream 558241 4456819 ~ 4462417 (-) False atad1a
TU48454 other downstream 865831 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other downstream 918473 2951462 ~ 2960177 (-) True G32908
XR_006250982.1 other downstream 1272735 2587553 ~ 2605915 (-) False add2
TU48396 other downstream 1293224 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 1324504 2496504 ~ 2554146 (-) True G32857
TU48820 other upstream 246349 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other upstream 246349 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other upstream 246349 4144927 ~ 4193081 (-) False LOC122346168
TU48850 other upstream 723912 4622490 ~ 4623058 (-) True G33175
XR_006251120.1 other upstream 1532686 5431264 ~ 5431394 (-) True LOC122346225

Expression Profile