RNA id: TU48810


Basic Information

Item Value
RNA id TU48810
length 454
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC122345411
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 4050782 ~ 4051472 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttattttattttatatccctgGCAATGCACCTTTGATTTCCTATCACGTGGTTATGTGCGCTGTCCCCTTTAAGAAATAAGCGTTCGCGCacatgagagagagaagtgCACGTCGACCGACGGAGAACTGAGTTAAAGCGTTGCACAAAGAAATAGttgataaaactgttaaaaggaGATAAATCCCAGTTTATATCTACTCGTGAATGTGTGGGTACATGGTTTCATTTGACGATTACAAAGGAGTTGCCTTATTGCACGTGAGAGATCGCCAGTGGGGGAAGGGAAATTCGGACCACGTTAATGGAGATCGAGCAGGGGAGAGCAACGAAATGTGAGATCGAGTGTTAATGACCATGTGAGCTTTTGCTGTGTGCTTCGTGGAATCAGTCGGAGTAAGTGTTGCTTATTTAATCGTCTCAAAGTCTgtatcattttgtgtattttctgatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250999.1 lncRNA downstream 81951 3967856 ~ 3968964 (-) True LOC122345413
TU48808 lncRNA downstream 146369 3898591 ~ 3904546 (-) True G33140
TU48785 lncRNA downstream 301899 3744675 ~ 3749016 (-) True coq5
TU48784 lncRNA downstream 301899 3747616 ~ 3749016 (-) False coq5
TU48777 lncRNA downstream 398027 3648466 ~ 3652888 (-) True G33124
TU49028 lncRNA upstream 808530 4859999 ~ 4902402 (-) True G33300
TU49044 lncRNA upstream 862412 4913881 ~ 4915751 (-) True G33310
TU49071 lncRNA upstream 973476 5024945 ~ 5027815 (-) True G33330
TU49073 lncRNA upstream 981094 5032563 ~ 5033954 (-) True G33332
TU49075 lncRNA upstream 982642 5034111 ~ 5053903 (-) True G33333
XM_043240840.1 mRNA downstream 152337 3878650 ~ 3898578 (-) True piwil2
XM_043239162.1 mRNA downstream 177026 3849493 ~ 3873889 (-) True slc39a14
XM_043239522.1 mRNA upstream 86062 4137531 ~ 4141903 (-) True LOC122345410
XM_043240860.1 mRNA upstream 93387 4144856 ~ 4192823 (-) False LOC122346168
XM_043239521.1 mRNA upstream 236330 4287799 ~ 4319735 (-) True LOC122345409
XM_043240871.1 mRNA upstream 298758 4350227 ~ 4370478 (-) True LOC122346182
XM_043238426.1 mRNA upstream 405350 4456819 ~ 4462417 (-) False atad1a
TU48805 other downstream 156440 3885425 ~ 3894475 (-) False piwil2
TU48804 other downstream 156440 3885550 ~ 3894475 (-) False piwil2
TU48454 other downstream 1038096 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other downstream 1090738 2951462 ~ 2960177 (-) True G32908
XR_006250982.1 other downstream 1445000 2587553 ~ 2605915 (-) False add2
TU48820 other upstream 93458 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other upstream 93458 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other upstream 93458 4144927 ~ 4193081 (-) False LOC122346168
TU48850 other upstream 571021 4622490 ~ 4623058 (-) True G33175
XR_006251120.1 other upstream 1379795 5431264 ~ 5431394 (-) True LOC122346225

Expression Profile