RNA id: TU48822


Basic Information

Item Value
RNA id TU48822
length 2563
RNA type TUCP
GC content 0.53
exon number 14
gene id LOC122346168
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 4144856 ~ 4193081 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTGGACGCGTGCTATTTATACGCGTTCTCGTGAGACCAACAGCAATGATAAAGAATGCATTTACTTTTGACTCCTTTCAAATTAGAAAGAATGCCTCGCATGCGAGGAGCGCACATCGACACAAAGGCGCTAAATGACGAGGCTTGTCGCTTTTGTTTGTGGCGCATCACCTGTACGCTCTGCAGGTGCAGGTGGGCTTTCGGTGACAGGTGGCGTTTGGGAAAGGGAGGAGGGCTTACTGTGGGGCCTCCAGGGCTGATGGGGGAAATGCTTTGCCTCGGAAGTATTGTGCCTGACACATGCTCCGTCTGCTGCCTCCGCGCCGACCCCTGCCTCTTTTGTTATGCTGATTAAGGCAACAGGCACCGTCTTTTGTTCAAGTCAGAGgacgcgagagagagagacagagagcgagcACGGAAGGATGGTCACGCTCTCCGTGACCTATAGTCTTCTCTTCTGTAACGTCACAAGGTGCGCGCAACAAAAGCGAGCCAGCATCGGCGGAGTCCTTCACATCGCGACGCGAGCTGAGCTTGACGCAACTCTTCCCTTCACACACGCCGGCACCGGACTTATGCACGCTCctttatgccattttttttagcCAGGAGTCGCGAAAAAAGCGATTTGACCGATGCGCGAAAGGGAACGCGGACCCGATAAATAGATGCTGGCCGCCGCCGTCGTGAAACTGATGGGGGGAACGTAAAATCGGACTCCGGGGAGAACTTAAAGCGGACTCTTCTCGTAAGAAAAGCGGAAACTGCGGGGAAGGGAGACAACGATCCCGCTGCTTTCAGAACTTGGACAGCTCCCTCGTTCATCCGCCTACACGCGTCCGCCGCGAGAGGATCCGTCCAAACTACGGCGCAAAACCCGATTCGGTTCTCCCAGAAGGCATGGCGGGCGTACTTCAGGGAGAGAAGCAGCTTTTCGAGAAGTTCTGGCAGGGCACGTTCAAAGCCGTGGCGATGCCGAGACCCGAGAGCATCATCGTCGCCAGCATCACCGCGCGGAGAGCCGTGACAAAACTGGAGACGGCTGTTAGCTTAGCGCCTAAAGACGATGAGGAGAAAGTGAAAGCGAAAAAGAGCGGTTGCAAAAACCCATGAGAAAAATGGACACGTGAAGCGCAGAGGACGTAAACGGCACAGTCACCGTCGAGCTCGCAGCGTCTCTTTTGATGCTGATCTTTCCCCTCGGCCGGTGcctaaagcaaagaaaaagaagaagaagtcacagagaaagaggaggagacaCAGATCTCCCTCCTGCAGTCCATCACCTgtgaggaagaagaagaaaaagaagagctCAAAGAAAAGGAAGCGACATAGGTCTGCCTCAAGGAAGGGACGACACAgCGGCTCGAGTCCCAGACGTAAACGAAAGGAGgacaaaaagcataaaaagagGACAAGGAGCCACTTTCATCATGAGACACGGCACCGGAAAGCACAAATTAGGAGTTCTTCCTTCATGGAAAACAGATACGAAGACTGTGAGAAACCTGGTTTTCAAGACGGTGGCCATTCATCGGCTGTCCACGGAGGCAACGCATGCAGGTCGGCAATCAAGCTGACCAGTAAAATCTCCTCTAAGTGCTGCTGCCACTTTTCTGAAAGCACCGAGGAAGTCTTGATTGGTCTCTCCGTCACGTCCTGGGGTTGAGGGTTTAAACAAAATGGTGATCGTCCAGGACTCGATGTCCCATAAGGGCAAAGGACATGCCGATTACGATTCAGGAAATGACACGTCCTCTCCACTGTCAAGTAAAACGGGCATCACAAAGTCAAAGGTGTCCGGAAACAGAAAGTTCTCATGTCAGGATCTGACGTCTCCTGAGAAGCTCAGGCTGGCCGACGGAGACAATGCCTCAGATTCAGGCAACTCTCTGACCAGCTATGACTCTCTGGGTAAACCAGTGCTCAAAGAAAACACCCTTCACAGCTCTGTCTTCAGCAAGCTCAAAGGCGAAGAAGCGGGCAGGTGCTCTGATTTGGAGAAGACGCAGGCCCTGGGTGTCGTGACTGATAGAAATCGTAGTCCGTCTCATGATAGATATCAGGATCGAGCGAGATCCCGCAGCAGAAGTATATCATCCCAAAGCAGATACTCAGGCCGCTATTCCAGAAGCAGATCCCTGTCCTCGGGGAGGAGATCATATTCCCGTTCATCCAGTTACTCGCTGGATTCTCGGAGAGACAGCCTGTCTAGTGCCAGCAGTCACTCGCGGTGCACGCTAGACAGGTTTCGAGAGCGGAAAAGACACTGCAGTTCCTGCAAGAGCAGAAAGCACAGCAGGAGAAGACCTTGTTCTCCGAtgaggaagagaagaagagactCCCCCAGTCACCTGGAAGCCCGCAGAATTACAAGTGCCAGAAAGAGGCCGATCCCATACTACCGCCCCAGTCCCTCGGTCAGCAGCCGGTCCTCCAGCCTCCTGACCTGGCGTCTGTTTTCTCTCAGTCGCAGCCGCTCACGCAGCCGCAGCCGCAGCCGCTCTTATTCGTCATATAGGAGCTACAGTCGCAGCTCGTCGTGGAACTCTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48755 lncRNA downstream 46554 3607467 ~ 4098373 (-) True G33109
XR_006250997.1 lncRNA downstream 93455 4050782 ~ 4051472 (-) False LOC122345411
TU48810 lncRNA downstream 93458 4050915 ~ 4051469 (-) True LOC122345411
XR_006250999.1 lncRNA downstream 175963 3967856 ~ 3968964 (-) True LOC122345413
TU48808 lncRNA downstream 240381 3898591 ~ 3904546 (-) True G33140
TU49028 lncRNA upstream 666918 4859999 ~ 4902402 (-) True G33300
TU49044 lncRNA upstream 720800 4913881 ~ 4915751 (-) True G33310
TU49071 lncRNA upstream 831864 5024945 ~ 5027815 (-) True G33330
TU49073 lncRNA upstream 839482 5032563 ~ 5033954 (-) True G33332
TU49075 lncRNA upstream 841030 5034111 ~ 5053903 (-) True G33333
XM_043239522.1 mRNA downstream 3024 4137531 ~ 4141903 (-) True LOC122345410
XM_043240840.1 mRNA downstream 246349 3878650 ~ 3898578 (-) True piwil2
XM_043239160.1 mRNA downstream 271039 3849493 ~ 3873888 (-) False slc39a14
XM_043239521.1 mRNA upstream 94718 4287799 ~ 4319735 (-) True LOC122345409
XM_043240871.1 mRNA upstream 157146 4350227 ~ 4370478 (-) True LOC122346182
XM_043238426.1 mRNA upstream 263738 4456819 ~ 4462417 (-) False atad1a
XM_043238425.1 mRNA upstream 263738 4456819 ~ 4462417 (-) True atad1a
XM_043238166.1 mRNA upstream 294760 4487841 ~ 4557844 (-) False galnt9
TU48805 other downstream 250452 3885425 ~ 3894475 (-) False piwil2
TU48804 other downstream 250452 3885550 ~ 3894475 (-) False piwil2
TU48454 other downstream 1132108 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other downstream 1184750 2951462 ~ 2960177 (-) True G32908
XR_006250982.1 other downstream 1539012 2587553 ~ 2605915 (-) False add2
TU48850 other upstream 429409 4622490 ~ 4623058 (-) True G33175
XR_006251120.1 other upstream 1238183 5431264 ~ 5431394 (-) True LOC122346225
unassigned_transcript_954 other upstream 1763218 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 2631090 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 2730349 6923430 ~ 6943192 (-) True usp20

Expression Profile