RNA id: TU49166


Basic Information

Item Value
RNA id TU49166
length 1384
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id LOC122344983
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5588045 ~ 5595174 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTACTCAGTGCTGTTCTCTTTACAACTGGCCAGCAGACATCAACAGCAGTGTCATTTAACGGAGTGGACCCTCAGCGGTGTTTGTGTGGGATCTAGGGGAAAGTTCAGCCTTGAAGGTCTGAATTGAGGGGGAGGGAATGGTAGCTCTCGCAAACAACCTATGAATATAATAACAGCAGCGTCAAAGGTCAGAATACGTGTGATGTGTAACGGGACACAAACGGCAAAAATACTGAAGCACGACACAACCGATGTACCAAAACATACTCTTTGAACCTGAACTCGAGGTCAAGACTGAGCCACCAGATCCAGCACTGAACGATCCAGACTCAACCAACCAGACGGCAATCTGAGACAAACACCTCCAAACAGCCGACCCCAGCGAAGCACCTGTGCCGACCCATCCTCCCCTGCTTCTGGTTGGGCCCGAAGCCCTTCATAGGCATCCTGGCAGTCTGGCTGCTTCTCCTTACTCTTCTTCAGTTCAGTGAGCACTGATTCCGGCGGACTTCCCATCCACGATGGCTTCCCCTTAGCGACCTTGTTGGGTTCTGACAATGCTGATTGGTGGTGGACCCCACTGCCAACGCGATTAATATTGCTACCGCTGGTCCGACCATGTTCCACCTGTTCATCCATCTGCTGAATGGCCTCAGCCCCCTCAACCACACCTTCTCTTGGAGGCGGGTGGCTTTGCCGATGATTCTCAACACCGCctttcctcctcttctcccACTTCACAAACTTGGAGCCCTCAGCAGAGTTGTCGATGTAAACCTGTGAACTTTGCATCAGCTGGTACCACCAGCCAGCTTGCCTGTTTCTCTGTTTGGCTCCAtctccatctctttctttccttttctctttctcactgtCTTCTCCAACTCCCTTCATCCTTCCACCACACCACCCGCTGCCTTCTATCTGTCCTGCGTCACTCTTTCTCAAACACTCTTTGCCAACTCCAGCCTCTTTATATCGGGTTTCACGCTCCGCTCCTGCACTTTTCCGCCCATCtcgtttcatttttaatgtcactCCCTCAATCCTAAGCTGACTGTCGTCATCTCTCAAGAtgaagctttctctctgaggcAGCATTCCCACTTCCTGCTCTCCAGACTCCAACATTCCACAGCCTCGCATGAGCTGGAAGGTGGAGCGATCTGATTGGTCAAGGCTTTGGCGAGCAGAGCACAGCTGTTCTTTGCGTCTCAGGTGTTCTTCCCCTTTCTGTAGCTGGTGTGGCTCAAATAGCAGGTCAAGGTCAAAGGGCAACAGTGAGAGCGGCTGAAGAAGGAGCAGCAACTCTTCAAACAGTGGCTGGCAGGCTCCTTGAGACAGGGGTAGGAAACCCCATGGGTGGTAGTGTGCTGCTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49160 lncRNA downstream 3445 5582143 ~ 5584600 (-) False LOC122344984
XR_006251035.1 lncRNA downstream 418796 5142578 ~ 5169249 (-) False LOC122345808
XR_006251034.1 lncRNA downstream 418796 5142578 ~ 5169249 (-) True LOC122345808
XR_006251036.1 lncRNA downstream 418796 5146350 ~ 5169249 (-) False LOC122345808
TU49076 lncRNA downstream 512011 5075761 ~ 5076034 (-) True G33334
TU49210 lncRNA upstream 6235 5601409 ~ 5602204 (-) True G33409
TU49227 lncRNA upstream 23091 5618265 ~ 5620705 (-) True G33423
TU49226 lncRNA upstream 24443 5619617 ~ 5620705 (-) False G33423
TU49238 lncRNA upstream 58906 5654080 ~ 5654764 (-) True G33434
TU49258 lncRNA upstream 84509 5679683 ~ 5684284 (-) True G33446
XM_043238962.1 mRNA downstream 133289 5435977 ~ 5454756 (-) False LOC122345133
XM_043238964.1 mRNA downstream 133289 5435977 ~ 5454756 (-) False LOC122345133
XM_043238959.1 mRNA downstream 133289 5435977 ~ 5454756 (-) True LOC122345133
XM_043238960.1 mRNA downstream 138849 5435977 ~ 5449196 (-) False LOC122345133
XM_043238961.1 mRNA downstream 139155 5435977 ~ 5448890 (-) False LOC122345133
XM_043238672.1 mRNA upstream 25895 5621069 ~ 5629286 (-) True foxn4
XM_043238673.1 mRNA upstream 53081 5648255 ~ 5653029 (-) True kctd10
XM_043238430.1 mRNA upstream 73619 5668793 ~ 5671129 (-) True mmab
XM_043239673.1 mRNA upstream 225178 5820352 ~ 5842997 (-) False trpv4
XM_043239672.1 mRNA upstream 225178 5820352 ~ 5842995 (-) True trpv4
XR_006251120.1 other downstream 156651 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 964987 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 1394964 4144927 ~ 4193081 (-) True LOC122346168
unassigned_transcript_954 other upstream 361125 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1228997 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1328256 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1335698 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 1526548 7121722 ~ 7121849 (-) True LOC122346221

Expression Profile