RNA id: TU49227


Basic Information

Item Value
RNA id TU49227
length 1574
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G33423
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5618265 ~ 5620705 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGATGAAAACACagattatttaatgcataattacaaatctttttaaaaacagcctTATAAACAGTCGACAAAAGTCAGGCACTTTGGCTCTAAGTATTAATCTGACTTGTATgttctaaaaacacacaaaatcgATTCAAGGCATTGCATCTGATCAATCGGAATCAATAGCTGAATTAAAGCCATTAAACAAGCCATTCAAATATACAGTGGCCCTGACACTGATAAATAACACTGTATAACTACGTTCATTATTATGTGATATATTTAACACCAAGCAGATTTTTGTACATCTAATACGAACAGATAACGAACTTCATGGCGTCTGAATGTACTTTAACAACTCTGCAAGTATTTTGCAATGCTTACTGCATATTACTAGAAATTAAAGTTATCAATAATTCTCCTGATGCTAATTCCACACGGTGAGCGTATCGTACTGATAACAGTTTGTTCTGCTTGATTAACGTTGCATATATTCCTGAGGAAGTGCTACACAGCATGAACCTAACCCATTCAGGCGTGCCCCAAGCATCGGTGATTCCCTGAAACCATTTAATATTCAGTCTTGTCCGTTCATTGTACATTCATCAGTCGGTTATTTCCACTGTACACTGGTTTCCCTCTCTTGAGAACGAAATGTTCTGAGAAACGTTGTCGTGGTCACTGTGAGTCTGCGATAAACATGTGGACTGTGCTAATGCCGGACATTTAAAATTGTGCGTTTAAGGCTACTGACCAATGTTTTGATCCAAAGAACAGtgctttctgtcttttctcattaaagcattaaagcgctgttatttaataatacCGTCTGGATGTCACCCGTCTGTAGGTTTATTGAAATGACATGGATGTGATCAGCTGGTGGTGGAGTTGTCCATGGTGGCCAGCAGGTGGCAGACTTTGGCTCTCTGTGAGGGAGTGATGTTCTGAGCCATCTGGATGATGCAGTCCATGGTCACGTCTGGATTGGCTTGGACTCTGCGGATGTGTTTGAGAGCGTAGTCCCTCTTTAAGCATTTAATGTTCTCTCTGATGACTGAACGTGTCCCGTCCTGCTGTGACAGATGGTTTTCCAACCACTCTACCACCACTTTGTTATTGTCCCACAGATATGCCTGAAACATTTTTACGGTCCCTTCTGTCTCCACAAACCAGCGTCGTAACATGGACTGTATGTGGCCGTTGCTCAGATCTTGGTTGGCCTGCATGATCTCCCCCTTCACCACCTCCTCCAACAGCAGTCGCCTCAGACGCCAGTAAAAGAACGATCTAGCGTTCTTCCAGTCCAGGATGTCctggaaatatttaaaagaaagccCCCTCGGGGGTAGATTCACAGCTATTGAAAAATCTCTCTTCATAAAAGGCAACCTATGGAGCctaatatttaggttttttcttatgtttataCCGTGATGACGCCCTTTTCCTGCATCCTTCCTGGAGTGTCATGAAGGTCCACAAACTGCACCGCCACCTGGTGGTAGATGGGAAGAAGGAACTCCTCTCTAGACTTCAGTTTGGCCTCCAAGTCCTTACGCTCCTGGCTTGCTAACTCCGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49210 lncRNA downstream 16061 5601409 ~ 5602204 (-) True G33409
XR_006250957.1 lncRNA downstream 20636 5574164 ~ 5597629 (-) True LOC122344984
TU49166 lncRNA downstream 23091 5588045 ~ 5595174 (-) True LOC122344983
XR_006250956.1 lncRNA downstream 23245 5588927 ~ 5595020 (-) False LOC122344983
TU49165 lncRNA downstream 28360 5588045 ~ 5589905 (-) False LOC122344983
TU49238 lncRNA upstream 33375 5654080 ~ 5654764 (-) True G33434
TU49258 lncRNA upstream 58978 5679683 ~ 5684284 (-) True G33446
TU49417 lncRNA upstream 275423 5896128 ~ 5897353 (-) True G33533
TU49427 lncRNA upstream 325284 5945989 ~ 5946874 (-) True G33542
TU49429 lncRNA upstream 332571 5953276 ~ 5959213 (-) True G33544
XM_043238962.1 mRNA downstream 163509 5435977 ~ 5454756 (-) False LOC122345133
XM_043238964.1 mRNA downstream 163509 5435977 ~ 5454756 (-) False LOC122345133
XM_043238959.1 mRNA downstream 163509 5435977 ~ 5454756 (-) True LOC122345133
XM_043238960.1 mRNA downstream 169069 5435977 ~ 5449196 (-) False LOC122345133
XM_043238961.1 mRNA downstream 169375 5435977 ~ 5448890 (-) False LOC122345133
XM_043238672.1 mRNA upstream 364 5621069 ~ 5629286 (-) True foxn4
XM_043238673.1 mRNA upstream 27550 5648255 ~ 5653029 (-) True kctd10
XM_043238430.1 mRNA upstream 48088 5668793 ~ 5671129 (-) True mmab
XM_043239673.1 mRNA upstream 199647 5820352 ~ 5842997 (-) False trpv4
XM_043239672.1 mRNA upstream 199647 5820352 ~ 5842995 (-) True trpv4
XR_006251120.1 other downstream 186871 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 995207 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 1425184 4144927 ~ 4193081 (-) True LOC122346168
unassigned_transcript_954 other upstream 335594 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1203466 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1302725 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1310167 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 1501017 7121722 ~ 7121849 (-) True LOC122346221

Expression Profile