RNA id: TU49238


Basic Information

Item Value
RNA id TU49238
length 515
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G33434
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5654080 ~ 5654764 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTATTTCTCTTTGCAGTCTGCAACGGCAGATAAACCTTCTGACCAGAGCCTGGATTTGCGTGGcagctttttctttctctttataccCTTTCCTTTCCTCCCGCGCTATCCTGGCTTTATCCAGGAACTGGGATTTGGAGGTTTGGGTAGCAGTGAACATGTTTTCACTCTTGACCTAATGTAGTGACTGGTAATACTTCTGCTTCCACGGGTCACATGAATGCTATcacatattaacatttttcGTTCTGGAGGTCCATTGGACTCTACAGATCAGAAGAATAAATTTCTTTGagacattttattaatgcacgAAAATCAATAGCACGTCTTAAAACAGCACAAGCAATCCACTGATTTAGGAACATGAGTAAAACGttgctgtattaaaaaaaaacttattaaaattattctgGAAAATGAGCGTATGTTATAAATTAAATGCTCATTTtactttgctttttaaaaaaacacatcaacgGATTATATAGCAGAAAGTGGCATCAAGACCGAG

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0042594 response to starvation biological_process
GO:0031667 response to nutrient levels biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0016054 organic acid catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49227 lncRNA downstream 33375 5618265 ~ 5620705 (-) True G33423
TU49226 lncRNA downstream 33375 5619617 ~ 5620705 (-) False G33423
TU49210 lncRNA downstream 51876 5601409 ~ 5602204 (-) True G33409
TU49166 lncRNA downstream 58906 5588045 ~ 5595174 (-) True LOC122344983
XR_006250956.1 lncRNA downstream 59060 5588927 ~ 5595020 (-) False LOC122344983
TU49258 lncRNA upstream 24919 5679683 ~ 5684284 (-) True G33446
TU49417 lncRNA upstream 241364 5896128 ~ 5897353 (-) True G33533
TU49427 lncRNA upstream 291225 5945989 ~ 5946874 (-) True G33542
TU49429 lncRNA upstream 298512 5953276 ~ 5959213 (-) True G33544
TU49440 lncRNA upstream 314478 5969242 ~ 5982803 (-) False G33549
XM_043238673.1 mRNA downstream 1051 5648255 ~ 5653029 (-) True kctd10
XM_043238672.1 mRNA downstream 24794 5621069 ~ 5629286 (-) True foxn4
XM_043238962.1 mRNA downstream 199324 5435977 ~ 5454756 (-) False LOC122345133
XM_043238964.1 mRNA downstream 199324 5435977 ~ 5454756 (-) False LOC122345133
XM_043238959.1 mRNA downstream 199324 5435977 ~ 5454756 (-) True LOC122345133
XM_043238430.1 mRNA upstream 14029 5668793 ~ 5671129 (-) True mmab
XM_043239673.1 mRNA upstream 165588 5820352 ~ 5842997 (-) False trpv4
XM_043239672.1 mRNA upstream 165588 5820352 ~ 5842995 (-) True trpv4
XM_043239675.1 mRNA upstream 165588 5820352 ~ 5842993 (-) False trpv4
XM_043240923.1 mRNA upstream 188914 5843678 ~ 5849639 (-) True gltpa
XR_006251120.1 other downstream 222686 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 1031022 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 1460999 4144927 ~ 4193081 (-) True LOC122346168
unassigned_transcript_954 other upstream 301535 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1169407 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1268666 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1276108 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 1466958 7121722 ~ 7121849 (-) True LOC122346221

Expression Profile