RNA id: TU49258


Basic Information

Item Value
RNA id TU49258
length 4602
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G33446
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5679683 ~ 5684284 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggttttattgtttttggggTCACAGTATTCGGCCAATAGCAAAAAAGCTGGATagatggccaatcagagcacaccttgcttcaccaaaccaaaataaaatctatgCATTTCAGAGAGGAAGGGTTTAGAGAAGCAACAATACTGTACAGTATGGTGAAAATAATGAGCGTTTGGAACCCATTGGAACACactgcattacaccaaatacacaaaataatgtagttgtttttctgcaacatcatatgaccacTTTATTTCTgtaaggatttaaaaaaaaaaaaaaaaaaaaagttagccaTAAACCGAACAACCAGCTACTAGGTGAATCGCAGaatcacaaagaaaaataaaaaattataaagattTGGTTCAACAGTGGCGCCGTTTGCTTTCTTTGTAGAATCACATTGTAGCCTTTCACCTGGAATTCCGCTATTAAAcaggattatttaaaaaattaataaataatgtagacTGACAGCTTTAACAAAAGCATATAACACTGATTAACAAGCTCACAATAGCTCTATTTTCAGAGGTTTAAGTTATTGTCAAAAATCAATTCCACTCAATTAAAGTTACTGCCCGTCAAGTGCATTCCGAATCAGTGGCATATAAAGTTTGATTACAGTTAAGATGCCGTCTGCGCAGGGCAGCtcgctaggttttggaacagagcttcAAACAGCAACAAAATCTCTCCGTGTTCTGGGAAGGTTCTTTactttgtgtgtgcgtgtttctgTTCAGAGCAGGTAAAGGTGCCCTTCCCCGACACCCTCCGCTCTCAACTGCTTCGATTTGCTCCGAGAGATTTTCTGAGGAGAGTCTGACAGGCTTCATGCTCCGAGCGCTAGCCAAGCAGAGATGAGCGCTGCTATAAAAATCAATGAAGCTCTTCAAAACCTACAGTACAACAAAAGCATTACTCTGCAATTAGATCTGTAGACGTGAGCAACCAAACACTACACTTAGTAAAGTtcagatattttatattgtaaaatcaatacggtatatatatatatacacagtagcACTGGCATAATAAAGAATGTTATGCAATTTCTGCTCTGTAGAGCAAGAAAACAAGGACTGTTGCGTTCGGAGTATCAGATGAAATATCATAGTATTCTTGGGAGTGCCACAACCATGAAACGGTAAATATGATTCACATTTCGTGtacgtttcattttttttcccatggaAAAGTGCacagtttaagtttaaatatgtatgaaaaGGGTTCTTCGGTCACCCCATTAATATGAGGTTATAAAAGTTGCAAGCATACTTATAAAAGGATGATCAAAATTACGCTTAAACTAGTATTAAATTCACACCGCAGGATTCCCAACAACTCAAATACCATTTAATTACGGTTTTATATTCATGTACTATGGTGTTACCGCAAAGAAAACCATGACATTATTATGATGTTGTGATGgaacgtttttgtttgtgaaaaaaGATCTTCAATTACAAATGCTATTAACATACTACACAGAATCATTCATCATTGAACTGAGATGCTTTCGCCGAGACCGCGAATAACAATGATATTGGTTCAAATGTGCTCATTCATCAAGACAGGACCTTAAGTGAATTCATCAACCTGAAGTGTCTATAAGACGCTGAAGTCTTGTGTTCTCACCGATTTATCCTACCTATTCATGTTCCCGCACAAGgacttcttttctctctctctctcacacacacacacacacaaacacgcttcATCCTCTCGACATGTGCAGGTCTGTGCCAGATTCTTCTGCAGTCGACAGCCTTAATGGGGTCAGCTGACCTCTGCTCTCACTTCTCACCAGGGCCAGGCAGAAGGGGAATGCCTTTCTCCACTCTGAAAGACACACAAACTCCCACACATACTCTCATTTTACACCACCTTGACCCTGACCCTTGCAGCATCTCCTCAAGAGGAGCAGAGAAAAGAGCCCTGCTCAGCTGCAGAGCCACGAGCTCTTGAAGGAAGGTGAGAGGTCACCGGTGGGCAAGACCAAAGCCTCCTCGAGAATTGGAATCGCACCAGGCTCCACCGTGAAATATCACCAGCCTCGATTTTGCTAAAGTTGCTAGGGTTAAAAATCAATAAGTCTAATGAACTAGAGGGGAACGGAGAGGAAAAAGGAAACCAAAGAGGAAAATGCCAGGAAGGAGAAAAGCgattgaaaggaaaaaaaggagagaaaatacAAAAGGAAATGGAAATTACGGAACAGGGGAAAGGAAAGGAAGACAAAATATGAAAAGGAAAAGGGGATAATAGAGCAGGAATAAAGGCAAAATATGAAAACGAAATATGAAAGTAATAGAgcaagaaagaataaaaaaggaaatgaaagaagaataaaaaaatgaaatattggaAAAGAAGGGGATGGAGGTGGAAAGGAAAGAcgaaaatgactaaaacattaaaagcaaaggaaagaatgaaataaattggAATAGAAAGGGAACAGAAgagggaaaaagaaaatatgaaacagaGGAAAAATAAGAGGAAAGAGGAATTGGAAAAGGAAATGGGAAGgatcagaaaatgaaaataaaaacaatgaaacaacaggacagaaaaaagaaatgaaaagtatCAGAacggagaaaaagaaaacatgaagaGGAAAAGCGAAGGAGGAGGAAGcaacaataaaagaaagaaaaggagtagaaaaagagaaagataggCAAGATGACAGGACAggaaaagtaaaagaaaaggATGCAAATTAATGGAAAGAGGAAAGGACGGTAACATAAAGAGAGGTGATGAATGTTGCTTTCCCTGTAAAAGTGCGATGAAAGGTGAAGCCTGCTGAGAAAACACTCACAGCTGGCCAGTCGCTGGCTTTTATCTGCGCCACTCTCACAAAAAGGACATGCTGCCAGCGTGCTCTTCTGCCATGATCTGTTTACAAGAGTGTCACACAGACCAACGCAGAGTTCATATCTATCACGCTCAGTGTCACATCCCTGCAGAGAATGAGTCACAACAGCACCAGAGAAAAgaggaataaaaacacaacatttactCATTACTTGAACTGTCACTCTTGAACTTCCGTTAAAACGAACGCGCGGGAGACGGGAGACGGCCTCGGCTGGCGACAGGCTAACGGAATAAAGGAGGGGAAAAGGCCTGAAGTCgcgttttattatatttcaatagCTCTGCCGCTTCCCTCCATCCTTGACCCCTTTTCTCGGCTGCCTCTGTTATCTGAAATAATGTCAGGCCATCCTTAGAATCTATTCATCAGCGCAGAAAGAAGCTGCGGCTGACATTGATAAAAAATACCATCTGTGCCTCGCAGGGAGGAGAGACGGAGAGGTACGGCTcgcccctcctcctcctcattcCTCTTCATCAATGCAATTTAAATTGAAGAGCTCAGCGGTAATTAAATTCAAGCTGGGGTTACGGCGGGGGCCGAAGGCGCAGATTCGACACGACAGAGAGAGGACGCCACACCGAGGGTCAAGGTTCAACCGAAGGCAGCCAGTTCCCATTCATTCAAACAACCTGTCTGCACAAAAGCCTTctgacatttaaagaaatgaataaaaacaacgaacgaaaggaggaaaaaaaaaaataaaatcaaaaaaatcaattattccACATTTTTCTCCTCCCTCCACAAACTGACCTTTTCTCTCTAACATCCTCTGCCAGCTGTTTGTTGGACAGACTTCAAAACTGCCAATAGTGTTTAACTCGTAGCCCGCCCTATCGAGGGGCTCTCTCGCGTTCGGGAAACGGGAGGAGGAAAAGTCGATAACCGTTTGAGGGATCCGTTTTTGTGGAATTGTTTGTCAGCACAAACACGAGGCGCATGACTAGCGGCAGGTCAGGGGGATTTCGGCGGACCGGGGGGGGGGCGGTCTCGGGGCCCCCCTCTTCTGGTTAAAGCCAGCTTTACTCACTCATCTGTTCTCCCTCGAACGGCCGCCGCGGCCCTCTCCTCCCTCCGCTAATCCGGTTACCGCATTCACAGGCAGCACCCTCTCTCTTTTCATTACAGCAGATCAGAGATTGAAAAGCGATTCCTCAATCTGTCCGAGGACGAGATCCAAATTGGATCGGGCCAAAGCGAATGCGGCAGAGACGGGGAAAACGGGAAGGGAAGATGACGCGACTCATTTTTACCCTTTAGAGCCGATTGCATGGGGAAAAAGCAATGTTCATAGAGTTTGTGTACGGGTAGGTGGCCTGTGATTGACAAGAGGACAACGGCTCACTTCGGAGCTATGAGGTCACTTCCTTAGTGTGCCGCGATTGCTCCCTCTTAAAATGTCGACGCACTCCAAAGGCTTCGAACTGCTACAAAGAAAGCTGGAGGTTATTTATTTGAACGGTTTTGAAAAATGCCTCATCAAGGCATTAGTTCGATCGAAAACGGTAATACCAATAGCACCGCGAATtgcttaatatgttttaaaatcaaatacatttttgcgaCGGCAAAGCAGAATTTCGCAGCTGCTttagtgtcatatgatccttcggGAATCATTTTAATACGCTAATTTGGCgcttaaacgtttttttttttaaatagcttaaaaCACCACAAATGCACT

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49238 lncRNA downstream 24919 5654080 ~ 5654764 (-) True G33434
TU49227 lncRNA downstream 58978 5618265 ~ 5620705 (-) True G33423
TU49226 lncRNA downstream 58978 5619617 ~ 5620705 (-) False G33423
TU49210 lncRNA downstream 77479 5601409 ~ 5602204 (-) True G33409
TU49166 lncRNA downstream 84509 5588045 ~ 5595174 (-) True LOC122344983
TU49417 lncRNA upstream 211844 5896128 ~ 5897353 (-) True G33533
TU49427 lncRNA upstream 261705 5945989 ~ 5946874 (-) True G33542
TU49429 lncRNA upstream 268992 5953276 ~ 5959213 (-) True G33544
TU49440 lncRNA upstream 284958 5969242 ~ 5982803 (-) False G33549
TU49443 lncRNA upstream 286464 5970748 ~ 5982803 (-) False G33549
XM_043238430.1 mRNA downstream 8554 5668793 ~ 5671129 (-) True mmab
XM_043238673.1 mRNA downstream 26654 5648255 ~ 5653029 (-) True kctd10
XM_043238672.1 mRNA downstream 50397 5621069 ~ 5629286 (-) True foxn4
XM_043238959.1 mRNA downstream 224927 5435977 ~ 5454756 (-) True LOC122345133
XM_043239673.1 mRNA upstream 136068 5820352 ~ 5842997 (-) False trpv4
XM_043239672.1 mRNA upstream 136068 5820352 ~ 5842995 (-) True trpv4
XM_043239675.1 mRNA upstream 136068 5820352 ~ 5842993 (-) False trpv4
XM_043240923.1 mRNA upstream 159394 5843678 ~ 5849639 (-) True gltpa
XM_043240904.1 mRNA upstream 174995 5859279 ~ 5884164 (-) True git2a
XR_006251120.1 other downstream 248289 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 1056625 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 1486602 4144927 ~ 4193081 (-) True LOC122346168
unassigned_transcript_954 other upstream 272015 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1139887 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1239146 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1246588 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 1437438 7121722 ~ 7121849 (-) True LOC122346221

Expression Profile