RNA id: TU49448


Basic Information

Item Value
RNA id TU49448
length 4802
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G33549
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5969242 ~ 5982803 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCCTTCAAAACCCTTCACTATCGATGATATGAGAGGACTTACATTTCTAGAGTTACGCTGCGTTACCGTTTTAGACGGAGCCCCTAAAATACGGTACGTTTTTAGCATTTACTGTCTTTAAACGTTTGCCGTCTACTGCTGTGCGTAGCTGGCGCACGAAACACGGTCTGCACACTCTCATGCGGTCGAGCTATACCCTACATCACCCCATGCATAGGACTTGCGCTTTGCGTCCAGGTTGAGATTTATGTCACACCCACCCCTCTAAACGGTACGGTccagaaaagaaataaatggggttttttttaagaagcttTCTCCATGCACTTTCCCGTGAATTCAGGAGTGCAACACTACAGAGTTTACGCGTATCTTCGTTTTTTTTAACCCCTGGATGTCCCGTTACATTAAGTGCCCTGGTGAATGAGCGCTAacgtatttagttttttgcccTCACGGCTGATTGTTATGACAtgatgaaaaagctttcttccCTATTTTGGTTTGGCTTGGCGAGGTGTCGTCGACTAGCGCCTCAGCTAACACTTCCCTCCCACCCCGTCTGCAGGGGGCCGGCGGGCCGTATGGCTCCCACCCCTGCTAGACCACCCTTCCCCCCAGGTAAAGGGCAACGTATGCCCTGGGTATCAGAGGTTCCCGTCCTCTCCCGAAGTGAATCTCTTCAATCAGGTAACATCTACACCCCATAGAAGGCTGCAAGTCTTTCTTTGAGTGGAAGAGGAAACTGGTCAGAAAAGCGTCTCCAATTCTCGTCTCCAACCTGGTTCTTAAACCCATGCAATATCTAACAAGGAACACACACTTGAATATGAAGCACGTATCCATAATCATAAACTTGAAGCTTTTTCCCAATTCACAGACTggcagaaaacattttatacagcGCTCTCTACCTTATAGAACATTTCTCGAAGATCGTCTTTTGGGTTCATCCAGGATGCTACAGCGtcacagaaaaatataaagtcCTACGAAAACGGTAAAGAAAACAGAGAGGGTGGTTTTTCAATTGTCGAAGCACTCTGAGAGACGACGGCGAGAATAACGTGTCGTACCTGCACCACGCCACCAGGGTTGACCGTGATCATGGTGCAGATTCCTCTGAACGCAGAGTCTTTCTCTTCATTGTCTCTTATATTGCGAAGAGAGGTGCACCTAGTGAAGGGAAGAACCAGTTTTCAAATAACAAGCCTGTGCGGTTAGTTCGCATGTGGATAAACACACAATCAACACAATATCGTGACTACCACCTCAGAGCACCTTGAGCGAGACTAGCAAACGTTTTAAAAATCACAGAGATCGGTCAATCGAGAAACACAAATTGGTCTCTTTATAAAGAAAACCTTCTCTTGTTGAAAGCAAAAAGTAGTTTGTTGTCAGTGACGATCTCgtactattcatttttttcgttattgttaatattatttgttcttaaatcGCATCCTTCTTTAGCAGTTATGGACATTTATAAAGATCTTTAAAGAGCTTTTTGTAGAAAAACAACCTACTTGCTTGAATTCTTTGTAAGACAAATACAATGTCTATATAGCACCATGTATTCTGTCACGTACTAGTTTATAGCGTTAAACTAGTGCAAATTTTGGGGCAGGCATTCTGGGATTGAAACATGCTGCTAGAAGACTCCGCATCTAATGGGGAGAAGAAATGCTTTTCCATTTCTCTTCATTTTATCCACTTATCTAGCGCTTCCGTTTCCTGAAACCAGCAAGCATTTGATATTACCCCATGCACTCGATTAGTAGTTAGATAGCGACAATAAAAAGACGAAAACAGaagtgaaaactgaaataaatcaattgaGAATACATGAAGGTGCTACTGAGGCAAATTAAACGACAAGACCTAGAGGGACAGGGTTAGTCACATGGTTGGCAATGATTTAGACTGAATCATACAGAACAGAGAGAAAGGTAGAGCGAAAGAAAGGGACGCCTTCTCTCGAATGTCTTGAACAGGCTTTGTCTTTTTCACGATGGGGAATCGGAATAATTTATGCTTTGTTTGCGAAATTCTGGCTGCGTCTATACTAGCGTTAGGCGTGAAGAAAAGCAGGAGCCTTTTCAAGAACACCGGGACAAggtttagagagagagagcgagaaagtaagagagagagagagagaggaagagagagaaccATAGGGAGAAAAGCCaaagatagacagaaagaggaaatgaatgaaataaaagattgAATAATACACACCAGGGTCTTATAAACTGCTGTAGCATGGGTGCCACCTCTTGAGGACAAACGTAACCAAGACGACCAATTGTTATTGCTAAGGTAACGCAATCACGGTTATACAGCACCAAACGCCAACCAAGACATGAGCGAATGAGGGGGGGgaggagaaaacaaaaagaaacaaacaaacaaacaaacagacaactCAGAAACAGAACTCAACAGAATCTGTGTATGAGAATAAACACAAGATTTCACTAGTGCTCTTCACAGCCCCAGACTACAGggtcaaatgtaaaatatgacactaaaaaaaacatagatCTCGTTTAAGGGAGGAGTCTTAGAAAACACGGTTTCCTCTACAGCTCAGAGTTACAGAGAAACGCTACGTTCTTGTTTCAGATTGGCGCCAGGCAGATCCGTGTAACGCTCATGTGTGGCTGCAATATAGTGCATACTCCTATCCCCAAAACCCCagtatcacaggaataaaaaaaaaaaaatcttgttttctaAGATTTTCTCCCTTAAACTCACAAAaatttcttcagtagaacagaaaagtcttgtctttctttctgtctcttttgttacattaagaaatgcatattacGCCAAGCGAACTACATGGAGAGGACTAGATTCCACCGGGATCTTAAGAGGCACAGAGGAGGGAGACCTAAGTTTAAGAGACACAAAACTATGCAACATTCTCATTAAAGACAGGCATTTATGAACAGTCCAATGAGACATGCAGAAAGCAGATGATTGGCTCATTAGAGAACGCAGTTCAGTGCAGGATGAGCTGATTCAGAGTCTGAAACACAGTCAAGCGGTGTTCGCCGTTCTTCTATTCATTAGCAATTAAATCAAATACTCACAAATTCAACATAAACTCAACGTTAGAACAATAATGGCGTAAAACCTGCACTATAGAAGagatacactactgttcaaatgtttgaggtGTGTAagatgttttcatgtttttgcaaGAAGCCTcttatgaaaaaagaaatattggaatatttttatattttatatttttatagcttttttttagcagccattactcccaaatgttgatttggtgctcaagaaacatgtattattatcataatcaatgttaaaaacccatgtggtgcttaatattttttgtggaagcgtgatatttttacatatttaggtgtaaaatatttttttaaaagtctacATTGTTacaattcaatttaatatattcttgcggattaaaaatatgaattgtttcctttaaaaaaaatcttaacccAATCTTATGAACAGTAGCGTGTTAATAGACTCAAACTTAAAACTGACTAAAATGGTCAGTATGGATTTGCCTACGCCACATGCTTgcttcaaaatttaaaaaaggactTTGCAACATCAATAACGAAGACATCAGCAATCCTGCATCAAACGTTAGCCGTCCTTAACTAAACAACATTCAACATCTATTGGCAGATATGCATTCacattgaaaaagaaaagtaaataaaacaacagaaataaatcgACAAACAGGAACACATCTACAAGTACCCTTGTTTCTGTGGGAGTATGTTATGAGCATTACACTTCaccctcatttaaaaaaataaaataaaataaataaaattaaaaaaaaaaatcaatgtcgGCAGCCATTACGGCTCAGGCTAGAGCTTTTAATTTGAGCAGTCCAATCAGAGTGGAGTGTAACTGGGAAATAATTTGCGAGGTACAGGTGCTATACATTCATCTAAACACCACAAAACAGATTTAGATCTGAGTTTAGGCTTTTTCTCGGAAttaaatgggggaaaaaaaagactatttaaaggcaaaaatgttcaaaatcaaAGACAGCAGGTCTTAATATTCCTCTCAAGGTTGGTTTACATTCGGCATCGTTTATAACATCTCACTGACTGATGCTTGTAACCTCATTACAGTGAACAACTGGCTAACATAGAACTCACTGTTTTATTAATCCACTTCAGTCAGTACCACGGCTGGACGGTTACAAGGTCTgttacattcatatataaagAGAGGTAACTGACTTGGCATAAAATTGCccctatttttattcattacccAGCCGCCCAGAATACTGTGCAAAAAATTTTGACATCAAGTATTTATCAAACCTTGTAAGGTCCACTTCCTGGAGTTTGAATGGAGATTAATAAGCACTGCGGAATGGGGATCGGGAGAGTTTGGGAAAAGGATAGGGCGGAAACCTCTTGTGAGGGGTCAGCCTGGTCTAGCACCCCTCAGATGGTACCTGTATTCTCCAGCAGCGTCTTGGGTGTGTTGGGTCTGTTTATGATCTCCACGAGCTGCTGTAAAACCATCGGGACGTACGGCTGCATCTCAGAACCTGAGCAGAGAGAGGCAAGCAGCGCTTTAACCTTGAAGGCACGATGAAACGTACTTACTAACCGAAGACGATGATGAAACTCTCACCCATTTGAATGGATATTTCTCCAATGGCCCATGTCGCATTGTTGCAGACTGATATCAACTCCGGATTCAGGTTTGTGCCTAGGATAGGCATGAAGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49429 lncRNA downstream 15486 5953276 ~ 5959213 (-) True G33544
TU49427 lncRNA downstream 27825 5945989 ~ 5946874 (-) True G33542
TU49417 lncRNA downstream 77346 5896128 ~ 5897353 (-) True G33533
TU49258 lncRNA downstream 290415 5679683 ~ 5684284 (-) True G33446
TU49238 lncRNA downstream 319935 5654080 ~ 5654764 (-) True G33434
TU49536 lncRNA upstream 191262 6172144 ~ 6172412 (-) True G33610
TU49538 lncRNA upstream 192965 6173847 ~ 6174113 (-) True G33612
TU49541 lncRNA upstream 197290 6178172 ~ 6178671 (-) True G33615
TU49626 lncRNA upstream 628567 6609449 ~ 6611442 (-) False G33681
TU49627 lncRNA upstream 628567 6609449 ~ 6611492 (-) True G33681
XM_043238326.1 mRNA downstream 64708 5898895 ~ 5909991 (-) True slc6a4b
XM_043240904.1 mRNA downstream 90535 5859279 ~ 5884164 (-) True git2a
XM_043240923.1 mRNA downstream 125060 5843678 ~ 5849639 (-) True gltpa
XM_043239672.1 mRNA downstream 131704 5820352 ~ 5842995 (-) True trpv4
XM_043238540.1 mRNA upstream 105919 6086801 ~ 6089556 (-) True foxd1
XM_043239784.1 mRNA upstream 115275 6096157 ~ 6099701 (-) False ankra2
XM_043239783.1 mRNA upstream 115275 6096157 ~ 6099666 (-) True ankra2
XM_043239699.1 mRNA upstream 251384 6232266 ~ 6243818 (-) True enc1
XM_043239279.1 mRNA upstream 274536 6255418 ~ 6263302 (-) True gfm2
unassigned_transcript_954 other downstream 18328 5956299 ~ 5956371 (-) True trnak-uuu_104
XR_006251120.1 other downstream 543305 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 1351641 4622490 ~ 4623058 (-) True G33175
TU48822 other downstream 1781618 4144927 ~ 4193081 (-) False LOC122346168
TU49743 other upstream 843289 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 942548 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 949990 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 1140840 7121722 ~ 7121849 (-) True LOC122346221
XR_006251118.1 other upstream 1141457 7122339 ~ 7122464 (-) True LOC122346223

Expression Profile