RNA id: TU49541


Basic Information

Item Value
RNA id TU49541
length 500
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G33615
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6178172 ~ 6178671 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATGTTAAAAATACGAAAAGGTCAAGCTTTTCCCTCAGCGAGAATGAGGCGGAGAGAATAAAAGTGGAGAATGTGTGCGTTAACGCATGATGTTTCACAGGGTCACGAACAGGTATTTCTGCCGAGATGGGATGCAGCGGACGTCTTTTTCTTTGCCGTGTGAAACAGTTCTATAATAGTGGTATAGGTTTATGACTGCAAAAAGAATATTTCTCCTTTAATGGCTGTCCAAAATTAGCCGTGTGTTTTTGCAAGCAACATATAGTAGGCCTGTATCactataattgtattttacttCAATAACATCAGCTATTTTTGAGAAAAGTTAactatttaattacaatttttcaaTTAAGTAGTTGGTAAGTTTAGGAATTGGGAAGcaattagagatgtagaataaggcattagtatgtgcttaattagcattaataaatggctaatgttttggtaatatgcatactaaaaagcaactaataggtgttaAGTGTTACCATATT

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49538 lncRNA downstream 4059 6173847 ~ 6174113 (-) True G33612
TU49536 lncRNA downstream 5760 6172144 ~ 6172412 (-) True G33610
TU49440 lncRNA downstream 195369 5969242 ~ 5982803 (-) False G33549
TU49626 lncRNA upstream 430778 6609449 ~ 6611442 (-) False G33681
TU49627 lncRNA upstream 430778 6609449 ~ 6611492 (-) True G33681
TU49624 lncRNA upstream 430810 6609481 ~ 6611442 (-) False G33681
TU49629 lncRNA upstream 433069 6611740 ~ 6613055 (-) True G33683
TU49721 lncRNA upstream 580238 6758909 ~ 6796851 (-) True G33738
XM_043239784.1 mRNA downstream 78471 6096157 ~ 6099701 (-) False ankra2
XM_043239783.1 mRNA downstream 78506 6096157 ~ 6099666 (-) True ankra2
XM_043238540.1 mRNA downstream 88616 6086801 ~ 6089556 (-) True foxd1
XM_043238326.1 mRNA downstream 268181 5898895 ~ 5909991 (-) True slc6a4b
XM_043240904.1 mRNA downstream 294008 5859279 ~ 5884164 (-) True git2a
XM_043239699.1 mRNA upstream 53595 6232266 ~ 6243818 (-) True enc1
XM_043239279.1 mRNA upstream 76747 6255418 ~ 6263302 (-) True gfm2
XM_043238967.1 mRNA upstream 87066 6265737 ~ 6281395 (-) True aif1l
XM_043238966.1 mRNA upstream 104103 6282774 ~ 6343615 (-) True lamc3
XM_043238323.1 mRNA upstream 584465 6763136 ~ 6792026 (-) False ttll11
unassigned_transcript_954 other downstream 221801 5956299 ~ 5956371 (-) True trnak-uuu_104
XR_006251120.1 other downstream 746778 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 1555114 4622490 ~ 4623058 (-) True G33175
TU48822 other downstream 1985091 4144927 ~ 4193081 (-) False LOC122346168
TU49743 other upstream 645500 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 744759 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 752201 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 943051 7121722 ~ 7121849 (-) True LOC122346221
XR_006251118.1 other upstream 943668 7122339 ~ 7122464 (-) True LOC122346223

Expression Profile