RNA id: TU49624


Basic Information

Item Value
RNA id TU49624
length 1962
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G33681
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6609449 ~ 6611492 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCTTTCAGGAACTGAAAGCGAGTATAACCTGCCTTTAGGCGGAGACATACCTGGAACTAAATCTATCGCACAGTCATAGGGACGATGTGGAGGAAGAGAAGCAGCCCTGGACTTACTGAACACTTCCTTCAGGTCGAGGTACTCCTTGGGCACGTTTGACAGATTCACCGCCTCATCCTGAAACGAAACACAAGACACAGGAGAACAAGCAGACACAAGACAAGAGGCATAACAGTTCTCGCTCCACGCCGTGATTGAATTCTGGCCCCAATTGACCCTAGGGTTATGCCGAACCAGCCAGGGATGGCCAAGCACCACAGGGATGAGAGGTGAATCAGTCAATAGAAATTTAATTGTCTCTGTATGATTTCCAGACGTGACAAGTGTAACGGATATAGTGGAGTGAGTGATGTCAGGAAGGGCTTGTCCATTGAGGGCACTGACAGAGACCTTGTGACGTAGGGAGACAGTGGGAATGTGGAGTTGAAGGGCAAGAGTTCGGTCCAAAAGGTTACCTTCAGCCCCCGAGTCCAGCATGGCCGAACAGTCATGTCTTCCATCTGCCCACTGCAGTCTCACCGGGAGGAGGGTGGTGGTTGAGGATTTGTTTAGAGATACTCCACCCGACAGTAACCTCAATTCTACCGCCGGGCTTGTGCTTTTACCGGGCAATCCACCAAAAAATGGCCTGATGCCCCACAGTACATGCAAAGTCCTTTGGCTCTCCGACGATCTCTCTCTTCCCGGGAAAGCCGAGCTCTACCAACCTGCATGGGTTCGGTGTCAGGTGAGTGACTGATCGTGAATCCAGAGTTAACAGGAGAACATTCCGTAACTGGTGGTGATCGCTGACGACATCCTCGCTGGTCACGTTGCTGTAAACGCGAATCCACACGGAGAGCAAGATCAATCAGTCCATCCAAGCTGTTGGGTAACTCCAGGGTAAAAATCTCTCTCTGGATCCGGTCAGCCAACCCATGCAGGAACATGTCCCACTGCGCCTCCTCGTTCCATTTGCACTCAGCCGACAGGGTTCGGAACTCGATGGAAAAGTCCGAAACAGATCTTTCACCCTGACGGAGATCGGCCAGTCTGCGTGCCGCCTCACGCCCAACTACTGCACGATCGAAAACTCTTCTCATCTCCTCAGACAGTGCTTGGAACGAGGAACAACAGGGATGGCGATTCTCCCACACCGCCGTTCCCCATAAGGCTGCCTTCCCGGACAACAGGGTGAGTACCAGTGCTACTCTGGACTCTTCAGTAGCAAAAGTCTGTGGCTGAAGTGAGAAAAACATTGAGCACTTAACTAAAAACGATCTGCATAAATTAGGCTCACCATTATATACTTCCGGTGTCGGCAGCCGCGGCTCGCACTGAGTCACGCTGATAGGAGAAGCGGGGGAAGCGGGCGGTGGGGGTGGCGCAGTGGGCGTCCGCAGTTGTTGGAGTTGACTGGTGAGTTCGGACATCTGCACCACTAGCGCTTGCACGGCTCGTCCAGTCGCGAGCATTTGCTCGTCTTGATGATCCATTCGTGCATTGTTGTTTTCAAGCAGTTCTTGAAAATTACGAGCTTCCGCTGAATCCATATATGGTCAGATCCTTCTGTCACGCAAATCAAGAGAAGGATTCAATTGCGGAGAATGATAGTTTATTAGAAgataaacaaaagagagagtCACTGATAGCGGTGGAGCTCGTGCAGCGCGAGGATGGAAAGCGGGTGCAGGAACGCAGTGGCCGTCAATCCAAGCGAATCCTCTGAAGCAGGAACAATCCGGAATACCGATAAACGGAGAAACGtcagaacaggaactcaggacaacgGTGAGGATCTGACAATGAGAGCGGTGTTAGCTGGTCTTAAATAGCCCTTAATAATGAGCCACAGCTGGGGCTGATCAGATCGCGATCACAACTTAGACACACCCACCTCTGCAcataacagacagacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49541 lncRNA downstream 430810 6178172 ~ 6178671 (-) True G33615
TU49538 lncRNA downstream 435368 6173847 ~ 6174113 (-) True G33612
TU49536 lncRNA downstream 437069 6172144 ~ 6172412 (-) True G33610
TU49446 lncRNA downstream 626678 5980317 ~ 5982803 (-) False G33549
TU49448 lncRNA downstream 628599 5974699 ~ 5980882 (-) True G33549
TU49629 lncRNA upstream 298 6611740 ~ 6613055 (-) True G33683
TU49721 lncRNA upstream 147467 6758909 ~ 6796851 (-) True G33738
TU49720 lncRNA upstream 149655 6761097 ~ 6847805 (-) False G33738
TU49760 lncRNA upstream 224517 6835959 ~ 6838588 (-) False G33768
TU49756 lncRNA upstream 228929 6840371 ~ 6858383 (-) True G33768
XM_043238966.1 mRNA downstream 265866 6282774 ~ 6343615 (-) True lamc3
XM_043238967.1 mRNA downstream 328086 6265737 ~ 6281395 (-) True aif1l
XM_043239279.1 mRNA downstream 346179 6255418 ~ 6263302 (-) True gfm2
XM_043239699.1 mRNA downstream 365663 6232266 ~ 6243818 (-) True enc1
XM_043239783.1 mRNA downstream 509815 6096157 ~ 6099666 (-) True ankra2
XM_043238323.1 mRNA upstream 151694 6763136 ~ 6792026 (-) False ttll11
XM_043238322.1 mRNA upstream 151694 6763136 ~ 6792024 (-) True ttll11
XM_043238584.1 mRNA upstream 216673 6828115 ~ 6830827 (-) True LOC122344933
XM_043240070.1 mRNA upstream 224441 6835883 ~ 6839683 (-) False LOC122345679
XM_043240069.1 mRNA upstream 224441 6835883 ~ 6839683 (-) True LOC122345679
unassigned_transcript_954 other downstream 653110 5956299 ~ 5956371 (-) True trnak-uuu_104
XR_006251120.1 other downstream 1178087 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 1986423 4622490 ~ 4623058 (-) True G33175
TU48822 other downstream 2416400 4144927 ~ 4193081 (-) False LOC122346168
TU49743 other upstream 212729 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 311988 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 319430 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 510280 7121722 ~ 7121849 (-) True LOC122346221
XR_006251118.1 other upstream 510897 7122339 ~ 7122464 (-) True LOC122346223

Expression Profile