RNA id: XR_006251012.1


Basic Information

Item Value
RNA id XR_006251012.1
length 3196
RNA type transcript
GC content 0.48
exon number 23
gene id usp20
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6922846 ~ 6943203 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acaattaaaaacaacaactcccAAATCAAACGGCACACACGCCGTGCTGGtctgagcaaattaaaaatattttttgttcagATGAAAGAACTCGAAGCTTTCATTGGCTCTTGTCAAAGCGGTGACGCACGCTCGTGCTGTATTCAGTATGGATGCTGCTTAGTGCACTTCTACCCACCACTGTTAAAAACACCACCGACCGGCCCAAAATGATCATCTACGAGCGCTATTTTTGTCTCTGTCTGACAGcctgaggtaaaaaaaaaaatcaagatgaCTGACAGCGGGGATCTCTGTCCTCACTTGGACTCTATTGGAGAAGTTACTAAGGAGGAACTGATTCAGAAATCAAAGGGCACATGCCAGTCATGTGGAGTAGGTGGACCCAATCTCTGGGCCTGTCTACAGTGTGACTGTTCCTATGTAGGCTGTGGAGAATCGTATTCCGATCACAGCACCATACATGCACAGGCCAAAAAACACAACCTGACGGTAAACCTGACCACGTTCAGGGTGTGGTGTTATGTCTGTGAGAGGGAGGTGTTTCTGGAACCGAAGCCTGTTGCTCCTGTATCATTAGCTCACCGCTGCAAACCACACGAACAGGATCGTCTTCCCCAGACAGCATGCCACCCGTTAAAAGCAGTGCCTATTGCAGTGGCGGATGAGGAAGGCTCAGAATCTGAGGAGGATGAACTCAAACCTAGAGGTCTCACCGGGATGAAGAACATTGGGAACTCCTGTTACATGAACGCTGCGCTGCAGGCCCTCTCCAACTGTCCTCCTTTGACTCAGTTTTTCCTGGATTGCACTGGTTTGGTCCGTACGGATAAGAAGCCGGCGTTGTGTAAAAGCTATCAGAAGCTTATCTCTGAGCTCTGGCACAAGAAACGGCCAAGTTATGTTGTGCCCACTAGTCTGTTTCATGGAATCAAACTGGTGAACCCCATGTTTCGTGGCTACGCTCAACAGgacacTCAGGAGTTTTTGCGATGTCTGATGGACCAACTTCACGAGGAGCTGAAGGAGCCTTTGGCCGACTGCAGCGGTGCGATCTCCGATGTCGAGCCCGACCACAACCTTGACAGCCGTAGCCATGTCGATGGAGACCGAAGCCCTTCTGAGGATGAGTTCCTGTCGTGTGACTCTGGATCAGGAAGCGAGAGAGGAGACGCAGAGAGAGCGGGAGGAGAAGCAGAGCTGCTCATCCAAGATGAATGTGTGGGAGTGAGAGGAAATGGAGTAATCTCGGAGAAAGAGAGACtgaaggagaggagaggagaagagaggacACGGGAATTGGATGAGGATGCAGATGTGGACACGACTACACAAGAGggacaggcagagagagaaacCGAGACAACAACTACAACCACACATACGCCGGCACCAGGAAATACAGAACCCGATAATGAAGCCTCCATGCATTGTTCATCGTCTCGTCCCTGCAGCCCTGCTCACAGCGTGCAGGAACTTCACTCCAGACTCTCCAGCAGCCCACCGAGATCCAGCCCCCTCAGAGCTGGACCCACTTATACTTTCAAGAAAGCTCAGATGCTCCTGAGCaccaagaagaagaagcagTCCCGTTTCCGCAGTgttatttcagatatttttgacGGATCCATTCTGAGTCTTGTTCAGTGTTTGACATGTGACAGGGTTTCAACGACTGTGGAGACCTTTCAGGACCTCTCTTTGCCTATTCCGGGTAAAGAGGATTTGGTCAAACTCCATTCCTCCATCCACCAGAGCGCTCCTGTTAAAGCTGGTGTCTGCGCAGAAGGCTACGCCACCCAGGGCTGGATCTCCTACATCATGGATTCTATACGAAGgTTTGTAGTGTCGTGTATTCCCAGTTGGTTTTGGGGCCCGATGGTAACGCTGGAGGACTGCCTGGCTGCCTTCTTTGCTGCTGATGAGCTGAAAGGAGACAACATGTACAGCTGTGAGAGATGTAAAAAGTTGCGAAATGGTGTGAAATATTGTAAAGTTCTGCGTCTGCCAGAAATACTGTGCATTCACCTGAAGCGTTTTAGGCATGAAGTTATGTACTCATTCAAGATAAACAGCCATGTGTCGTTCCCATTGGAGGGTTTGGATCTTAAGCCCTTCTTGGCTAAGGAGAGCCCATCTCAGATTACTACCTACGATCTACTGTCTGTCATCTGTCATCACGGCACAGCTGGGAGTGGTCATTATATAGCGTACTGTCAGAATGTGATCAATGGACAGTGGTACGAGTTTGACGATCAGTATGTAACAGAAGTTCATGAGACGGTAGTGCAGAATGCTGAAGCGTATGTTCTCTTTTACAGGAAGAGCAGTGAAGAATCcgtgagagaaagacagaaggtTGTTGCTCTGGCTAATTTAAAGGAGCCCAGTCTGCTGCAGTTCTACATCTCCAGAGAGTGGCTCAACAAGTTCAACACATTTACTGAGCCCGGACCCATCACCAACCACACGTTCCTCTGTCAGCACGGAGGAATCCCTCCTACCAAGTACCATTACGTGGATGATCTGGTTGTGATCCTTCCCCAAAATGTGTGGGACTATCTCTACAACAGGTTTGGGGGAGGCCCGGCCGTGAATCACTTATACGTGTGTGCCATCTGCCAAGTGGAGATCGAGACTTTGGCCAAAAGGCGGAAACTGGAAATAGACACCTTCATCAAGGTTATGTCCTCAGAGCTACAGCATTTTTATGTAACGTGGTGTGGAAACTCCTCTTGGAAGGAGCGTGATGTTCTTGGAAGTGTTTGGTGCTCGCAAAAGCAAGAGTACTGATAAAACGCAGACTGCATGCTGGACAGATCAAGGCTTCTTATCAGAAGTGCAGCATCTGTGAGATGAAACACCAGCTTTGAATCAGACATGTCTTAAAGCTTTGGAAAAATCTTGAGGTCTTGTTCGAAAGAAGCGcataaaatacaacaatttaATCGCTACATATTGTACAATTCGGGCAAATGCTGAAATGCTCCGATCGGTTCAAGGCAGTTTGATAATcgctgtttctctttttctctcgctGTCTATAGTTAAATAAGGAGTTTCAAGCTGAAGAAGCGCCTATGGTCATCCTGTGTATCAGCATGCAGTGGTTTAGAGAATGGGAGAACTTTGTCAAGGGCAAAGACAACGAGCCGCCAGGCCCCATTGACAACAGCAAGATTGCTGTAATGAAAGG

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0021551 central nervous system morphogenesis biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005813 centrosome cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49800 lncRNA downstream 4083 6922846 ~ 6926789 (-) False usp20
TU49756 lncRNA downstream 72489 6840371 ~ 6858383 (-) True G33768
TU49720 lncRNA downstream 83067 6761097 ~ 6847805 (-) False G33738
TU49760 lncRNA downstream 92284 6835959 ~ 6838588 (-) False G33768
TU49721 lncRNA downstream 134021 6758909 ~ 6796851 (-) True G33738
TU49785 lncRNA upstream 6341 6949544 ~ 6952310 (-) True G33791
TU49791 lncRNA upstream 6341 6949544 ~ 6952310 (-) False G33791
TU49808 lncRNA upstream 17072 6960275 ~ 6961261 (-) True G33802
TU49809 lncRNA upstream 20752 6963955 ~ 6964175 (-) True G33803
TU49810 lncRNA upstream 21057 6964260 ~ 6964511 (-) True G33804
XM_043238293.1 mRNA downstream 9253 6917865 ~ 6921619 (-) True ptges
XM_043240071.1 mRNA downstream 88145 6840718 ~ 6842727 (-) True LOC122345680
XM_043240070.1 mRNA downstream 91189 6835883 ~ 6839683 (-) False LOC122345679
XM_043240069.1 mRNA downstream 91189 6835883 ~ 6839683 (-) True LOC122345679
XM_043238584.1 mRNA downstream 100045 6828115 ~ 6830827 (-) True LOC122344933
XM_043239751.1 mRNA upstream 2311 6945514 ~ 6949315 (-) False med22
XM_043239753.1 mRNA upstream 3577 6946780 ~ 6949313 (-) True med22
XM_043239747.1 mRNA upstream 9207 6952410 ~ 6954782 (-) True LOC122345529
XM_043239748.1 mRNA upstream 9207 6952410 ~ 6954772 (-) False LOC122345529
XM_043238577.1 mRNA upstream 76324 7019527 ~ 7042597 (-) True LOC122344928
TU49743 other downstream 104690 6824171 ~ 6826182 (-) True G33758
unassigned_transcript_954 other downstream 974501 5956299 ~ 5956371 (-) True trnak-uuu_104
XR_006251120.1 other downstream 1499478 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 2307814 4622490 ~ 4623058 (-) True G33175
TU48823 other downstream 2737791 4144927 ~ 4193081 (-) False LOC122346168
XR_006251117.1 other upstream 178519 7121722 ~ 7121849 (-) True LOC122346221
XR_006251118.1 other upstream 179136 7122339 ~ 7122464 (-) True LOC122346223
TU50081 other upstream 439143 7382346 ~ 7397153 (-) True G33998
TU50440 other upstream 776493 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50633 other upstream 1468679 8411882 ~ 8414806 (-) True G34372

Expression Profile