RNA id: TU50440



Basic Information


Item Value
RNA id TU50440
length 428
RNA type TUCP
GC content 0.46
exon number 4
gene id si:dkey-220k22.3
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7718565 ~ 7721758 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CATTACATTCGAGAACTTCATCCGGTACAAGAGGCATTTCTTGCGCGAGACTCAAGTTATTTGAACTTCTTGAGGAGCAGGCATGGATACAGCGCGGGCAGCCAGGGCGCATATTATCTGGACATCGATAGCTTTGGTCTTTATTTTAATCGCGTCGTGCTTGACTTATGTCTTCATGTCCAAGGTGCACGGATGCCAAGCAATTAGCACCGTGAATGTCTCTGCAATAGAAAGCATGTTCTCCAGAAAGAGTTTCTCTCGGGAACAATGGCTTTTAAcagCTCGGGActacaatacaaataattacTTGATATGGGAGGATGAGTGGCGCGGATACACGGACTTGCATGAGAGCATTCTGGACCAGAGCAACGTGTCGATGGTCATTCAAGAGAAAGGCGTCTACCTGGTCTACATACAAATTAACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU50461 lncRNA downstream 7202 7712043 ~ 7712494 (-) True G34248
TU50458 lncRNA downstream 9473 7709905 ~ 7710223 (-) False LOC122345606
TU50415 lncRNA downstream 75467 7642970 ~ 7644229 (-) True G34214
TU50121 lncRNA downstream 141484 7572160 ~ 7578212 (-) True G34025
XR_006251016.1 lncRNA downstream 220908 7495614 ~ 7498788 (-) True LOC122345617
TU50476 lncRNA upstream 140012 7861475 ~ 7861829 (-) True G34260
TU50482 lncRNA upstream 215048 7936511 ~ 7937371 (-) True G34265
TU50497 lncRNA upstream 291884 8013347 ~ 8013551 (-) True G34275
TU50498 lncRNA upstream 292223 8013686 ~ 8013937 (-) True G34276
TU50512 lncRNA upstream 379023 8100486 ~ 8100700 (-) True G34290
XM_043239899.1 mRNA downstream 7872 7706970 ~ 7711824 (-) True LOC122345606
XM_043239870.1 mRNA downstream 79446 7624124 ~ 7640250 (-) False slc25a25b
XM_043239866.1 mRNA downstream 79446 7624124 ~ 7640250 (-) False slc25a25b
XM_043239868.1 mRNA downstream 79447 7624124 ~ 7640249 (-) False slc25a25b
XM_043239865.1 mRNA downstream 79447 7624124 ~ 7640249 (-) True slc25a25b
XM_043239862.1 mRNA upstream 4498 7725961 ~ 7780945 (-) True si:dkey-220k22.1
XM_043239910.1 mRNA upstream 73287 7794750 ~ 7829765 (-) True camkk1a
XM_043238852.1 mRNA upstream 143674 7865137 ~ 7911974 (-) True atp2a3
XM_043238850.1 mRNA upstream 143674 7865137 ~ 7911973 (-) False atp2a3
XM_043238615.1 mRNA upstream 216708 7938171 ~ 7973561 (-) True zzef1
TU50081 other downstream 322543 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 597232 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 597847 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 776493 6930872 ~ 6943203 (-) False usp20
XR_006251011.1 other downstream 776504 6923430 ~ 6943192 (-) True usp20
TU50633 other upstream 690419 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 708237 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 953086 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 1208007 8929470 ~ 8930053 (-) True G34580
TU51091 other upstream 1494045 9215508 ~ 9220507 (-) False vamp5

Expression Profile