RNA id: XM_043238368.1


Basic Information

Item Value
RNA id XM_043238368.1
length 1665
RNA type mRNA
GC content 0.41
exon number 5
gene id si:ch211-117m20.4
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8160877 ~ 8164026 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ataactttttaaatagttgaacacaattttactgttttaatcaaataaatgcagccttggtgaggaaattattattattatacacaaacTTCACTCGTTGTTTTGCACATTTACTGTGATTTACTATATTTgtaggaaaaaaatgaaagcttgTGTGTTCTGGCAGTAATCCACTTTGTTCTGTGATCCTGTGTGTGACGTAGAACAGTACTTGTAAGTCCTGTTTGTTTGAATCTCTCAGGACAGGAGTCAGCAGGCAGGTTGTGCTGGGTTAGGCAGAAGTTTATGCATTACTGCAGCAATCAGAGGTCGGTGTTTGAACGTTTTTCACAGATTTGTGTCGTTACAGTAATTACACGCACTGCAGGTCTCAGGCACACCAAGCACTCTGCTAGGCAAGTGAAACGGACAAGATTAATCTCTAACATTGTTAAATGTGAAAAACGTGAAATTTACAATCGGCGCAACTGAAAGTTGAGCTAAACTGCAATTTAGACTTCCCATGGCTCTCTCCTTTTCTCagtaatctttttttctctctgctctGGTGATATTAGCTGGTCTGTTAGGCGAATTTAAGAGATTAGTTTGCGTTAAGGGCTTAGTGTAAGCTAAGATGCAACACTTCCCCTTTCTTTCCATCTGTCTCGCTCTGCCTCTCTGCAGGAGAACAGGTTCTTGAAATTAGCCTTCAAAGAATACTTTGGATACTTTACAATACGcaaattatttttctatattattCACATAATTATGCCTTTTACAATATGACACAATAGAACAAGGActtgatgattaaaaaaatgagaagaCGTTCAAAAGAGAACTGAAGGGATATAGACTACTTCTGTATTGGAAGAATTTCTGccattaaaacaacatgaaactAGGAGCTCTTCTACTGCTGCTTCTGGGGTCCTTACAAGGGGTGTTCACTCAAGTGCCTATAACTGCATTTACTGAAGGAACAGCTGTGGAGGAAGGTCTAGGAAGCGGTCTGTTAGAGGTGGAACAGGAGGATGAACTAGCGGACACTTACTGGTCTGGGACAGCCCCCCTTTGTTTTGGAGGGTGTAAAGGCAGGCACAGGGAGCTGAAGAGAGACAACTGTGGAGACTCAGACTGCTGCTGGATGGGATATAAATCCCTGTGTAGAGTGAATTGTGGAAAGCCTGATGTGGACTTTAATGGGATGGTGTATGGGAGTGATTGGTGGGTGGGTTCTGTAGTGAGGTACGACTGCAGACCAGGATTTGTGTTAATGGGAGACCCTGCCAGAGCCTGTCAGTCCAATGGGAAATGGACGCCCAAACCATCCTGTCTTAGAGTTTGCTATCGTGGCCGGGTTGAGATCAATGAGAAGGACATCGACGGGACATGTTCATCCACCTGTCCTGATGCTAAAAGCTACGCAGTCCCTCTGAACCACAAATGTAGTCGTATTGAGAACTGCAAGACTAAAGAATCAGGCTGGAAGCGCTGGTTTACACGCTGCAACTACTGTGACTGTGACTGCTTCACTCCCTgtgCTTTACAGGACAGAAGACAGTGAATCCGTATTCAatatccttttatttatttttttataaataaataaatttaagacATTATTATCACATGAGTTAGAAACgagaacatacatttttattgaacatGATAGGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50512 lncRNA downstream 60582 8100486 ~ 8100700 (-) True G34290
TU50498 lncRNA downstream 147345 8013686 ~ 8013937 (-) True G34276
TU50497 lncRNA downstream 147731 8013347 ~ 8013551 (-) True G34275
TU50482 lncRNA downstream 223911 7936511 ~ 7937371 (-) True G34265
TU50476 lncRNA downstream 299453 7861475 ~ 7861829 (-) True G34260
TU50548 lncRNA upstream 33442 8197468 ~ 8260129 (-) True G34314
TU50544 lncRNA upstream 35204 8199230 ~ 8200082 (-) True G34310
TU50543 lncRNA upstream 52937 8216963 ~ 8218476 (-) True G34309
TU50549 lncRNA upstream 91833 8255859 ~ 8262919 (-) True G34315
TU50577 lncRNA upstream 103067 8267093 ~ 8270648 (-) True G34332
XM_043238150.1 mRNA downstream 6502 8138108 ~ 8154780 (-) False abcg4a
XM_043238149.1 mRNA downstream 6502 8138108 ~ 8154780 (-) True abcg4a
XM_043238300.1 mRNA downstream 24675 8131517 ~ 8136607 (-) False pdzd3b
XM_043238301.1 mRNA downstream 24678 8131517 ~ 8136604 (-) True pdzd3b
XM_043240863.1 mRNA downstream 30110 8129121 ~ 8131172 (-) True atp5l
XM_043240280.1 mRNA upstream 145 8164171 ~ 8170627 (-) False LOC122345805
XM_043240281.1 mRNA upstream 145 8164171 ~ 8170592 (-) False LOC122345805
XM_043240279.1 mRNA upstream 145 8164171 ~ 8170590 (-) False LOC122345805
XM_043240283.1 mRNA upstream 145 8164171 ~ 8170585 (-) False LOC122345805
XM_043240282.1 mRNA upstream 145 8164171 ~ 8170507 (-) True LOC122345805
TU50440 other downstream 439819 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50081 other downstream 764129 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 1038818 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 1039433 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 1218079 6930872 ~ 6943203 (-) False usp20
TU50633 other upstream 247856 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 265674 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 510523 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 765444 8929470 ~ 8930053 (-) True G34580
TU51091 other upstream 1051482 9215508 ~ 9220507 (-) False vamp5

Expression Profile