RNA id: TU50549


Basic Information

Item Value
RNA id TU50549
length 296
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G34315
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8255859 ~ 8262919 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAGATGACACCTGCTTTCTCGAGGAGCAGTCAAGAGAGCGACGGGATCAAAGAGGGGCTTCTGAAGAATAAAAGAGCGGGCGACTATCTGAGAGCCGTTCATCGAGGTGTTCACCAGACGTACTGACCTGGGAACactgtttctctctcagctTGACctcttcctccacaagtctctgtctgtgtgcagTCTCATCCAGCAGCCTCCTCTCCACCTCCTCTCGCCGCCTTCTCTCAGCCTCCAGCAGCTGCTTTCGTGCCTGGACTTCCCTCTCCtgacgaaaaaaaaagaagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50543 lncRNA downstream 37383 8216963 ~ 8218476 (-) True G34309
TU50544 lncRNA downstream 55777 8199230 ~ 8200082 (-) True G34310
TU50532 lncRNA downstream 94083 8160877 ~ 8161776 (-) False si:ch211-117m20.4
TU50512 lncRNA downstream 155159 8100486 ~ 8100700 (-) True G34290
TU50498 lncRNA downstream 241922 8013686 ~ 8013937 (-) True G34276
TU50577 lncRNA upstream 4174 8267093 ~ 8270648 (-) True G34332
TU50581 lncRNA upstream 26980 8289899 ~ 8290183 (-) True G34336
TU50637 lncRNA upstream 158603 8421522 ~ 8425502 (-) True G34374
TU50656 lncRNA upstream 198129 8461048 ~ 8462056 (-) True G34389
TU50659 lncRNA upstream 200454 8463373 ~ 8463603 (-) True G34392
XM_043240350.1 mRNA downstream 45670 8203420 ~ 8210189 (-) True hmbsa
XM_043240352.1 mRNA downstream 45671 8203420 ~ 8210188 (-) False hmbsa
XM_043240351.1 mRNA downstream 46547 8203420 ~ 8209312 (-) False hmbsa
XM_043240349.1 mRNA downstream 46547 8203420 ~ 8209312 (-) False hmbsa
XM_043240285.1 mRNA downstream 80502 8171423 ~ 8175357 (-) True dpagt1
XM_043238357.1 mRNA upstream 9030 8271949 ~ 8282158 (-) False stk36
XM_043238356.1 mRNA upstream 9030 8271949 ~ 8282157 (-) True stk36
XM_043238627.1 mRNA upstream 19473 8282392 ~ 8287689 (-) True c5h11orf53
XM_043239799.1 mRNA upstream 106653 8369572 ~ 8386394 (-) True adamts15a
XM_043240774.1 mRNA upstream 167672 8430591 ~ 8431586 (-) False timm8b
TU50440 other downstream 534396 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50081 other downstream 858706 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 1133395 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 1134010 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 1312656 6930872 ~ 6943203 (-) False usp20
TU50633 other upstream 148963 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 166781 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 411630 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 666551 8929470 ~ 8930053 (-) True G34580
TU51091 other upstream 952589 9215508 ~ 9220507 (-) False vamp5

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU556133 True 2396 lncRNA 0.43 1 CI01000339 5858808 ~ 5861203 (-)