RNA id: TU50637



Basic Information


Item Value
RNA id TU50637
length 639
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G34374
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8421522 ~ 8425502 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gctgttttatttatgcCGTATTTCAGATACAgcattgcatatttttaatttaatatttacacaaaatagGCAGCAATGGTATCGGTagtgttggaaactttttttagcttctttttaagaagagaccaggagattcttggtaaagcaggagttcgtttttttatttcgttgctgtagtcatctgcaagaagtcttcaagaaatctttaagaaaatcgtcaagcaatctccaagaaaatcttcaagaaatctccaagaaacaaatctaaccgaaacatgttaggttgaagtatatatgtttcaaagggggaggagtacacagaggtggagaccagtaaaacaagagtatgcaaatgcgatcaggaacttagcccagaacaggaactttcccgatccttgatctatttagcatccaggtgtcattcaaatgcataggtgaaacaaaaggcacagttgtaccttaggattagcattcacacttgatttaggacacctaccagatgttcaagaactgaaagacaaaagataactgtctcggagcttgggcttcctgctcttagaatgtaaatcacaatacacattcagcatatactgttatattggcgtctgtgtttaaccttttataaatttgtaatacaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU50581 lncRNA downstream 131339 8289899 ~ 8290183 (-) True G34336
TU50577 lncRNA downstream 150874 8267093 ~ 8270648 (-) True G34332
TU50549 lncRNA downstream 158603 8255859 ~ 8262919 (-) True G34315
TU50548 lncRNA downstream 161393 8197468 ~ 8260129 (-) True G34314
TU50656 lncRNA upstream 35546 8461048 ~ 8462056 (-) True G34389
TU50659 lncRNA upstream 37871 8463373 ~ 8463603 (-) True G34392
TU50662 lncRNA upstream 39286 8464788 ~ 8465386 (-) True G34395
TU50663 lncRNA upstream 42118 8467620 ~ 8467859 (-) True G34396
TU50667 lncRNA upstream 46821 8472323 ~ 8473349 (-) True G34400
XM_043239799.1 mRNA downstream 35128 8369572 ~ 8386394 (-) True adamts15a
XM_043238627.1 mRNA downstream 133833 8282392 ~ 8287689 (-) True c5h11orf53
XM_043238357.1 mRNA downstream 139364 8271949 ~ 8282158 (-) False stk36
XM_043238356.1 mRNA downstream 139365 8271949 ~ 8282157 (-) True stk36
XM_043240351.1 mRNA downstream 212210 8203420 ~ 8209312 (-) False hmbsa
XM_043240774.1 mRNA upstream 5089 8430591 ~ 8431586 (-) False timm8b
XM_043239106.1 mRNA upstream 86100 8511602 ~ 8537027 (-) True ubash3ba
XM_043239108.1 mRNA upstream 112190 8537692 ~ 8543385 (-) True f11r.1
XM_043239107.1 mRNA upstream 112190 8537692 ~ 8543383 (-) False f11r.1
XM_043238509.1 mRNA upstream 121079 8546581 ~ 8549533 (-) True f11r.2
TU50633 other downstream 6716 8411882 ~ 8414806 (-) True G34372
TU50440 other downstream 700059 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50081 other downstream 1024369 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 1299058 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 1299673 7121722 ~ 7121849 (-) True LOC122346221
TU50638 other upstream 4198 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 249047 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 503968 8929470 ~ 8930053 (-) True G34580
TU51091 other upstream 790006 9215508 ~ 9220507 (-) False vamp5
TU51236 other upstream 912326 9337828 ~ 9402623 (-) True G34789

Expression Profile