RNA id: TU51630


Basic Information

Item Value
RNA id TU51630
length 431
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G35041
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10327031 ~ 10327461 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGCGGTTTGCACAGCCCTGCTCAAATAATGCAAAGAGTTCGCCAGCGCTGGTGGCCTCTTTTGTCTCTGCTCCCTGGGCAAACACAAGCCCCTTCCTGTCCCTCTTAATTTCGATTCGCTTGCTGAAAGCTTCAGCGGGGCTCACAAAGAGATCCTGCAGGCGGTCGTTGTACAGCTCCAGCATGTAGGCTGAAACCTTAGGACGGCCAAAAGAGAGAAGTTTAATGGATATTGTACATCAGCACAGCTCAAGAAACACATGCTTAGTGTACCTTAAACTCAAATTTAGACTCATTATCCTGAATGATCTCAAAGATCTTGGTGAATGTTCTTGGAATGATTCCCGGGTTCCTTCGATCTCTGTCTCCAACCATTGTGAAGGTTTTCCCTGAACCCGTGTGGCCATACGCAAAAATGCATACGTTAAAT

Function

GO:

id name namespace
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51629 lncRNA upstream 317 10325866 ~ 10326714 (+) True G35040
TU51492 lncRNA upstream 35170 10288424 ~ 10291861 (+) True G34959
TU51488 lncRNA upstream 39658 10285767 ~ 10287373 (+) True G34956
TU51490 lncRNA upstream 62590 10261612 ~ 10264441 (+) True G34957
TU51451 lncRNA upstream 187298 10064217 ~ 10139733 (+) False fam219ab
TU51631 lncRNA downstream 2428 10329889 ~ 10330322 (+) True G35042
TU51632 lncRNA downstream 5758 10333219 ~ 10333808 (+) True G35043
TU51689 lncRNA downstream 219760 10547221 ~ 10547625 (+) True G35081
TU51833 lncRNA downstream 485996 10813457 ~ 10816301 (+) True G35197
TU51838 lncRNA downstream 510551 10838012 ~ 10838367 (+) True G35202
XM_043240831.1 mRNA upstream 2396 10319660 ~ 10324635 (+) True LOC122346143
XM_043240832.1 mRNA upstream 2396 10319685 ~ 10324635 (+) False LOC122346143
XM_043240424.1 mRNA upstream 8427 10309609 ~ 10318604 (+) True tmc2b
XM_043240292.1 mRNA upstream 20338 10297132 ~ 10306693 (+) True tmc1
XM_043240753.1 mRNA upstream 45002 10276867 ~ 10282029 (+) True gda
XM_043240819.1 mRNA downstream 9762 10337223 ~ 10341120 (+) True anxa1a
XM_043240706.1 mRNA downstream 14736 10342197 ~ 10361067 (+) True mfsd3
XM_043240707.1 mRNA downstream 14755 10342216 ~ 10361067 (+) False mfsd3
XM_043238899.1 mRNA downstream 81174 10408635 ~ 10433693 (+) True rorb
XM_043239810.1 mRNA downstream 142215 10469676 ~ 10524790 (+) True abca2
TU51450 other upstream 208905 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 527673 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1455513 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 2022880 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2316432 8001578 ~ 8010599 (+) False spns3
TU51709 other downstream 401657 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 599362 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 719019 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1596767 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1921677 12249138 ~ 12255672 (+) True G35720

Expression Profile