RNA id: TU51689


Basic Information

Item Value
RNA id TU51689
length 405
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G35081
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10547221 ~ 10547625 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCGTGATGCTATTTCCACCTTTGTGACTCCAGTCAAATTTAAGATGCCAAGAACCCCCTACAAAGACGATGGTATTACCTCATCTACTGCTGCAGAACTTCTCACCAAAGTCAGTGTTTTCAAACTTCATTCTCGTTGGCATTAAGTGGCTGGTTCCTTATGGGTCTGGCACTATATGAAATCTCTGAAATGTGCTTCCTATGAAGGGTTTGATTTGATGGACGAGTCGAAACTGACATATTCCTTTGTGCCTTCCAGTGATCTTCAGAATTAACCGACAGCATGACAAGAACAAACGTTCTGCAACCAGTGAGGAGAGCTGaataaaaatctgaacaaaTCTGGGTTTCAGCCATCTTTAATTGCAGGCAAGCTGTGTAGAGGTGCAACGGTTTGAAAGGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51632 lncRNA upstream 213413 10333219 ~ 10333808 (+) True G35043
TU51631 lncRNA upstream 216899 10329889 ~ 10330322 (+) True G35042
TU51630 lncRNA upstream 219760 10327031 ~ 10327461 (+) True G35041
TU51629 lncRNA upstream 220507 10325866 ~ 10326714 (+) True G35040
TU51492 lncRNA upstream 255360 10288424 ~ 10291861 (+) True G34959
TU51833 lncRNA downstream 265832 10813457 ~ 10816301 (+) True G35197
TU51838 lncRNA downstream 290387 10838012 ~ 10838367 (+) True G35202
TU51871 lncRNA downstream 397431 10945056 ~ 11019192 (+) True G35229
TU51912 lncRNA downstream 589427 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA downstream 589427 11137052 ~ 11147242 (+) True LOC122346180
XM_043239815.1 mRNA upstream 288 10533187 ~ 10546933 (+) True pnpla7b
XM_043239817.1 mRNA upstream 16141 10527090 ~ 10531080 (+) False dph7
XM_043239816.1 mRNA upstream 16141 10527092 ~ 10531080 (+) True dph7
XM_043239818.1 mRNA upstream 16141 10527475 ~ 10531080 (+) False dph7
XM_043239810.1 mRNA upstream 22431 10469676 ~ 10524790 (+) True abca2
XM_043239680.1 mRNA downstream 5350 10552975 ~ 10608867 (+) False emid1
XM_043239682.1 mRNA downstream 5350 10552975 ~ 10607560 (+) False emid1
XM_043239684.1 mRNA downstream 5350 10552975 ~ 10607560 (+) False emid1
XM_043239679.1 mRNA downstream 5351 10552976 ~ 10608867 (+) True emid1
XM_043239681.1 mRNA downstream 5351 10552976 ~ 10608867 (+) False emid1
TU51450 other upstream 429095 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 747863 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1675703 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 2243070 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2536622 8001578 ~ 8010599 (+) False spns3
TU51709 other downstream 181493 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 379198 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 498855 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1376603 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1701513 12249138 ~ 12255672 (+) True G35720

Expression Profile