RNA id: TU51912


Basic Information

Item Value
RNA id TU51912
length 1520
lncRNA type sense_over
GC content 0.34
exon number 4
gene id LOC122346180
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11136223 ~ 11150225 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGAAAGCCCCTCCCTTACATGATGTGTTTGACTTTCAAATCTCTTCCGCACCATGACTACACAGTGATTTATGTCCAATATATTCGCTCTCTTTTTCTAGTTGAGTCCACCAAGTGAGTACAGACACAAGACCAAGCTGATATTACTATAATGCGACTCcgtcacatttttcttttcttccttcttGGAATGTTTGTTGGCTTATCACTGAGTGGGCTTGTTTACTGGGGATTCACCTCCATTTGGTTTAGAAATCATCTAACAGGTCAACTGGGTCGGACAGACGTTGCTTCTGTGACACCATGGTTAGCCCCGATTGTTTGGGAAGGAACCTTTGACTCCACAGTGATCGACTCTATccacaaacaacaaaacatcaccatagcaaccactgTCTTCGCTTTGGGAAAGTAACAAAGTTATATACTTCTCCGAGTCTAAAAATATGTCTTTTACTTtggagtttattttattactttttatgttaatgttcTTGGAAGATTTTGTGATGTCCACGAatgttataaaattaaaaatgttggtaaGGTTTAcatcaatcaaccaatcagtcactttttatttatataccgcttttaacaacacagattgtatcaaagcactgaacagtataaaattgTAGAATACAATGATTGAAcactttgttattaaatgcagagatggtctctgtaattaAACCAacaataatcgctagaaattaagaaGCAGGTCTTCcttgcagataccatttttctctaagaatgaatatagttgtaaggatactaccttttctagtatttttgacagaaaagggagattagagattggtctgtaatttcaaacaaattaacatccattccatgtggaAGTATTAGATCTGGAGTATGGTTTTGACAGTGACACGTATTGTCTAAACCCAATGGAGTTCAGAATGTTTAGAAAGCTaatcctaatgcatctttttcattatcaacatggatattaaaatcgccaacaattaagactttatctgcagccCGTAGTAACTcggttagaaaatcagcaaattctttaatcaAATGTATGTGGTGCCCTGTAGGCCTATATACAGTAGCCGGTACAATCATGACATTTAATTTATCACTAACATGTGTTTCTCTAGacaatgttatatgcagcaccaaaacttcaaatgagttatacttaaagcctgccctctgagaagtactcagaatattgttataaattgtagcctCTTTACCTTTTAGACGTGGCTTGTTTTTATAGCTGTAATTTTGGAGAGGTagactcatttaaagtaatgtattcatctggttttagccaggtttctgtcagacAGAGCAAATCTAGATTATGATTAttgatcaaaacatttaaagtagaAAGAAACATGCAAGCTACTTTACTAATAAAAGTGtcttgttcatatatatatatatatatatatatatgtatgtgttatttatatatatatatatatatgtaatatatatatgtatatatatataatgtatgtatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51871 lncRNA upstream 117860 10945056 ~ 11019192 (+) True G35229
TU51838 lncRNA upstream 298685 10838012 ~ 10838367 (+) True G35202
TU51833 lncRNA upstream 320751 10813457 ~ 10816301 (+) True G35197
TU51689 lncRNA upstream 589427 10547221 ~ 10547625 (+) True G35081
TU51632 lncRNA upstream 803244 10333219 ~ 10333808 (+) True G35043
TU51930 lncRNA downstream 40012 11187254 ~ 11187694 (+) True G35267
TU51941 lncRNA downstream 57258 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA downstream 59074 11206316 ~ 11208454 (+) True G35274
TU51940 lncRNA downstream 59074 11206316 ~ 11209405 (+) False G35274
TU51957 lncRNA downstream 147465 11294707 ~ 11303431 (+) False gria3a
XM_043240866.1 mRNA upstream 967 11127127 ~ 11136085 (+) True LOC122346179
XM_043239718.1 mRNA upstream 12703 11109781 ~ 11124349 (+) False LOC122345519
XM_043239723.1 mRNA upstream 12703 11109781 ~ 11124349 (+) False LOC122345519
XM_043239720.1 mRNA upstream 12703 11114762 ~ 11124349 (+) True LOC122345519
XM_043239721.1 mRNA upstream 12703 11114972 ~ 11124349 (+) False LOC122345519
XM_043240865.1 mRNA downstream 7297 11154539 ~ 11169552 (+) True rnf128a
XM_043239710.1 mRNA downstream 22971 11170213 ~ 11186674 (+) True tbc1d8b
XM_043239711.1 mRNA downstream 22972 11170214 ~ 11186674 (+) False tbc1d8b
XM_043239778.1 mRNA downstream 50969 11198211 ~ 11204226 (+) True mtmr2
XM_043239779.1 mRNA downstream 50969 11198211 ~ 11204226 (+) False mtmr2
XR_006251083.1 other upstream 74738 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 203889 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 406000 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1018926 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1337694 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 776986 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1101896 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1101896 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1366834 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1556129 12703371 ~ 12705241 (+) False iscu

Expression Profile