RNA id: XM_043240868.1


Basic Information

Item Value
RNA id XM_043240868.1
length 1382
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC122346180
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11136223 ~ 11150225 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCAAATCTCTTCCGCACCATGACTACACAGTGATTTATGTCCAATATATTCGCTCTCTTTTTCTAGTTGAGTCCACCAAGTGAGTACAGACACAAGACCAAGCTGATATTACTATAATGCGACTCcgtcacatttttcttttcttccttcttGGAATGTTTGTTGGCTTATCACTGAGTGGGTGTCACCTGAATGCGAAGCTCAAATGGCTGCTCTCTCTGATTCTCAGGCTTGTTTACTGGGGATTCACCTCCATTTGGTTTAGTCGGACAGACGTTGCTTCTGTGACACCATGGTTAGCCCCGATTGTTTGGGAAGGAACCTTTGACTCCACAGTGATCGACTCTATccacaaacaacaaaacatcaccatagcaaccactgTCTTCGCTTTGGGAAAaTATACAcgttttcttaaagatttcttggaATCAGCAGAGGAGCATTATTTTGTTGGATTTCATGTGCATTACTACCTGTTTACAGATCAACCAGAGGAAGTTCCTAATGTAAAACTAGGTGAAGAACATTACCTGACGGTAAAGAAGGTTCCAAGTATGAACCGATGGCAGGATATTAGTATGAACAGGATGAAAATACTGGAGAAACTAATAGAGAATGAACTGGCCAGTGAGGCAGACTACATCTTCTGCCTTGATGTCGATACAAAGTTCTATGGCCGCTGGGGAGTGGAGTCTTTGGGTCGTCTGGTAGGTGTGATACATCCCTGGTTCTTTGATGCTCCAAGGTTTATATTCACATATGAGCGTAGACCAGAGTCTCAGGCATACATTCCAGCTGGAGaaggtgattattattatactggCGCTGCATTCGGCGGCTCATTGAAAGATGTGCATCATCTCACCAAAACCTGTCGGGAGCAGATAAACATTGACATCGCAAACTCCATTGAGGCGATATGGCATGAAGAGTCCCACTTGAACAAGTATTTCCTTCATAACAAACCCAGTAAACTGCTTTCACCTGAATATCTGTGGCGGGACATTAGTATGAGTTCAGGCCGAGTAAAAATAATTCGCTTCTCTCATGTTTCCAAAAACAATGCTGAAGTTCGTCCAAACTTGTAGCACTTTTGAAAGAGTTTATATCCACATTAACACGTTGAGTTTCACaagtaaaaaaatctttacttttGGGGAAAAATGGGCAAACACAACTgttgtttctgaaaaaaaaacaactttgtagattgtaaatgtgatttaaaaacatgattgtGTAAATGAGTGTGATGAAGTGAGTTATGTTTCAACAGAGACATCCACCTAAAAGACAATACAGTTTTAATCAATCATGAATGTCAAATCctttttgtcaaatatttttctAGTAAAACAAATGGTTTAACATCCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51871 lncRNA upstream 117894 10945056 ~ 11019192 (+) True G35229
TU51838 lncRNA upstream 298719 10838012 ~ 10838367 (+) True G35202
TU51833 lncRNA upstream 320785 10813457 ~ 10816301 (+) True G35197
TU51689 lncRNA upstream 589461 10547221 ~ 10547625 (+) True G35081
TU51632 lncRNA upstream 803278 10333219 ~ 10333808 (+) True G35043
TU51930 lncRNA downstream 37029 11187254 ~ 11187694 (+) True G35267
TU51941 lncRNA downstream 54275 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA downstream 56091 11206316 ~ 11208454 (+) True G35274
TU51940 lncRNA downstream 56091 11206316 ~ 11209405 (+) False G35274
TU51957 lncRNA downstream 144482 11294707 ~ 11303431 (+) False gria3a
XM_043240866.1 mRNA upstream 1001 11127127 ~ 11136085 (+) True LOC122346179
XM_043239721.1 mRNA upstream 12737 11114972 ~ 11124349 (+) False LOC122345519
XM_043240865.1 mRNA downstream 4314 11154539 ~ 11169552 (+) True rnf128a
XM_043239710.1 mRNA downstream 19988 11170213 ~ 11186674 (+) True tbc1d8b
XM_043239711.1 mRNA downstream 19989 11170214 ~ 11186674 (+) False tbc1d8b
XM_043239778.1 mRNA downstream 47986 11198211 ~ 11204226 (+) True mtmr2
XM_043239779.1 mRNA downstream 47986 11198211 ~ 11204226 (+) False mtmr2
XR_006251083.1 other upstream 74772 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 203923 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 406034 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1018960 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1337728 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 774003 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1098913 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1098913 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1363851 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1553146 12703371 ~ 12705241 (+) False iscu

Expression Profile