RNA id: TU51930


Basic Information

Item Value
RNA id TU51930
length 441
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G35267
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11187254 ~ 11187694 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTGATAGATATTTTCATTAGTTGTTGTTTGGAATTTGAGATGTGCAAATTGAGCAGGGACAGTTACAGGTTTAAGTACAATCATTTATTGGAGAAGCATACAGCCCCAGAGAGTCAGCAAATTGGAGTTAgggtattttaattaaattaaaggtaaatagtactactactactaataataataataataataatattaataaaccgTATGCatgacttgtttaaaaaaaaaaaaaaaacatttagaaaatatggtGCATTTTCATCTTGTGTTAGTTTAAAGCAGAGGTTGTAGTCTCTTACTGGTCATAAAgcatttcaaaatgcaaaatactgTTTCAAAACTTTGGATACCACCTTGTTGgccatttgtaaatgtaataagcCTGGATTCATTAAACTGGGTGTTGTCTGCTTCAAGCTATTTTTATCTGTACAAT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51912 lncRNA upstream 40012 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA upstream 40012 11137052 ~ 11147242 (+) True LOC122346180
TU51871 lncRNA upstream 168062 10945056 ~ 11019192 (+) True G35229
TU51838 lncRNA upstream 348887 10838012 ~ 10838367 (+) True G35202
TU51833 lncRNA upstream 370953 10813457 ~ 10816301 (+) True G35197
TU51941 lncRNA downstream 16806 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA downstream 18622 11206316 ~ 11208454 (+) True G35274
TU51940 lncRNA downstream 18622 11206316 ~ 11209405 (+) False G35274
TU51957 lncRNA downstream 107013 11294707 ~ 11303431 (+) False gria3a
TU51991 lncRNA downstream 194976 11382670 ~ 11387096 (+) True G35304
XM_043239710.1 mRNA upstream 580 11170213 ~ 11186674 (+) True tbc1d8b
XM_043239711.1 mRNA upstream 580 11170214 ~ 11186674 (+) False tbc1d8b
XM_043240865.1 mRNA upstream 17702 11154539 ~ 11169552 (+) True rnf128a
XM_043240867.1 mRNA upstream 37029 11136223 ~ 11150225 (+) False LOC122346180
XM_043240869.1 mRNA upstream 37029 11136223 ~ 11150225 (+) False LOC122346180
XM_043239778.1 mRNA downstream 10517 11198211 ~ 11204226 (+) True mtmr2
XM_043239779.1 mRNA downstream 10517 11198211 ~ 11204226 (+) False mtmr2
XM_043240523.1 mRNA downstream 22682 11210376 ~ 11217745 (+) False fam76b
XM_043240522.1 mRNA downstream 22683 11210377 ~ 11217745 (+) True fam76b
XM_043240693.1 mRNA downstream 30829 11218523 ~ 11222820 (+) True cwc15
XR_006251083.1 other upstream 124940 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 254091 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 456202 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1069128 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1387896 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 736534 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1061444 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1061444 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1326382 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1515677 12703371 ~ 12705241 (+) False iscu

Expression Profile