RNA id: TU51940


Basic Information

Item Value
RNA id TU51940
length 1444
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G35274
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11204500 ~ 11209405 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTGAGGCTCTTGAGGTATTTGAGACAGAATTCACAGAGGTAGAGAATGGGCAGAGAAGTGAGCTCCTGTGGGTACGGAGAGAAGTACCAAGGCTTCAGTCTGTGCCGGCCCAGCTCAATACAGTCTATGTTCTTCATTCGTGTCACAATGTCATCGTGACTGCGGTCGGACACCAAGCTGCCGGTCATGCGTGGGGCAGATGGGATTCCATCTGAACTGTCCTGAGAGTCCTGAGACCAGAGAGTAGAGTCAGGGagatacacataaatacatgaagACAGtgacttcatatttgaataacGGGATTCACATAAACTTTTCCATGTCAGGTTTTCGTGACTTCTTTACAAAGTttgatatttgtgtatttacaaAATCCATTCTGCTTAGAATCTGATTCTTTAACAGTCCTAATTCTGACAAGACACTCAAACCAAAGCAAAAGCAGTGGGAAGTAAACGAGCCGGACCTCTCCTGGCAGCAAATAGACGGTGGAGCAGCGAGGGCTGTTATTCTGGAACATCTTTACCATCTAGAAAAACACAAGGGGGTTGCAAAGCTTTGGGAAATCTGAATGGAGTAAGGTAAGCCATAGAAATCTCAGTGGAAAACAGTTTAATGATTTGGTTTTGGTTCTCCCAGTTCTCACTCAGCTCTTACTAGCAGTCAGTGTTGGTTAGTAATATAACTGCACAGTATTTGTACCGAACACAGTATTTCACCTGTAATAGTAGCATTGTTGAATTACagtatgaaatatataactGCAATCTAAGCAGTTTTGAGATACTGAGcttcaaagttttaaaattcCTCTCAAAAAAGGCCACAAACGTACAAAGTTCATGTAAATAAGCTGTCAAAGAATACGAATTTgtgaacaaaaatgtcaaatggaACCTTATCATTTCAAAGGCGACGATATAGAAAATAAGTGGTAAGACACCACAGTCCTAATTTTAACAAacgttaaatattttacagcacCGTCTTCTTGATGAATAACgtaaaaagtaatgactttgatttatgtgaaatgtgactgatttatttattttgaaaatgagcatttttagcTGCAGGACGTACCTCATCTGTCCCTCcgcaactttttctttttctcccagGCTGAGGAGGAATGTGATGACGCTGGATGGATGATGTGCCATTCTTCCGGGAGAAAGAAGCAGAAGCCATAAAGAAAGGACGGGAAGTCGACAGCCCTCTGTGATCTCAACCTATGAGGACATAACGCAATTATAAATGACATCGACCAACGCAGACAGaacaaatttcatttaaatcgCCAACAAGACTACATAGTAAACAACTGTCTGTCCATTGCTCACCGAGTGATCCGCCATCTTTTTTTCTCAGGCGCACAGAAGAGCGCGCTACAGTAGAACGCCAGTCGCGTTTATTTTGCCTTGAGTGACGCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51930 lncRNA upstream 18622 11187254 ~ 11187694 (+) True G35267
TU51912 lncRNA upstream 59074 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA upstream 59074 11137052 ~ 11147242 (+) True LOC122346180
TU51871 lncRNA upstream 187124 10945056 ~ 11019192 (+) True G35229
TU51838 lncRNA upstream 367949 10838012 ~ 10838367 (+) True G35202
TU51957 lncRNA downstream 85302 11294707 ~ 11303431 (+) False gria3a
TU51991 lncRNA downstream 173265 11382670 ~ 11387096 (+) True G35304
TU51992 lncRNA downstream 175486 11384891 ~ 11387096 (+) False G35304
TU51993 lncRNA downstream 175486 11384891 ~ 11387170 (+) False G35304
TU51998 lncRNA downstream 196123 11405528 ~ 11405761 (+) True G35309
XM_043239778.1 mRNA upstream 2090 11198211 ~ 11204226 (+) True mtmr2
XM_043239779.1 mRNA upstream 2090 11198211 ~ 11204226 (+) False mtmr2
XM_043239710.1 mRNA upstream 19642 11170213 ~ 11186674 (+) True tbc1d8b
XM_043239711.1 mRNA upstream 19642 11170214 ~ 11186674 (+) False tbc1d8b
XM_043240865.1 mRNA upstream 36764 11154539 ~ 11169552 (+) True rnf128a
XM_043240523.1 mRNA downstream 971 11210376 ~ 11217745 (+) False fam76b
XM_043240522.1 mRNA downstream 972 11210377 ~ 11217745 (+) True fam76b
XM_043240693.1 mRNA downstream 9118 11218523 ~ 11222820 (+) True cwc15
XM_043240692.1 mRNA downstream 14549 11223954 ~ 11232994 (+) True acsl4b
XM_043240691.1 mRNA downstream 24002 11233407 ~ 11249164 (+) True stag2a
XR_006251083.1 other upstream 144002 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 273153 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 475264 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1088190 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1406958 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 714823 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1039733 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1039733 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1304671 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1493966 12703371 ~ 12705241 (+) False iscu

Expression Profile