RNA id: TU51991


Basic Information

Item Value
RNA id TU51991
length 2529
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G35304
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11382670 ~ 11387170 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAAACGTGTGCAGTTCatacaatgaaatattttactcaTTCCGCATTCAGACAAGATACAATCAGTATTTTCTCATTCGTTAAGGCAAACGGCATAGACCTATCAAATCAAGCTCTGTCATCTTACTGCTCCAGTGTAATATGTAGGATAGTTAGGTGTATTATCTCTGATCTCGCTCGAGTGGCATGGACAAACCTACCCCAAGAAGAAACACACTGACCCACAGagataagcaaaaaaaaacaaacaaaacaaaaatatagttCAACAGGCTGATTGTTTGGGCCATTTCGACAGTAGCCACTAAATTAAGTGTATGCGCGTGTATTCAGTCAAATCTAAAGGGCACTTCACAGATCTGTGTTCAAGCAGTCAAAAATGCTGCCTAactgtaaacataaacaaacataaaagaaacTTCGtcacaactttaaaaaaaaaaaaaaaatgacctaaTTTCAGATTTTGGCTTTCACCCAGTCAAAAGACCACAAAGAgatgtaaattaataaagctacacaggagaaaaaaacaaaaacaaaactaaaacctgagaaggcaaaagaaaaaaaaccagcTGCCATAATAATGGCAATCTAGAGGGGCTCAACCCATATTCTATTTCAATCTAGCCACGTGTTAGTAATTAGACTCTATAACAAAACTAAGGtgttacaaaaaaagtcataaacaTCTATCGTACCTTTAAGTTTCACAACAAACTTGAAAGCAATAAAATCCAGTATTAAAGGATATCTTTCATTATAAGCAAGGGCTGTCATCTAACTGTTGGTTTTAAAGTCTCTTTAAAGCAGAAATAACAGACAGCAACATTCAAGTGAATCCTTAGTCCTCAACATGCAGGTAACATTTATATATCCTAGAGTGACAGGTGAAATACAGTGAGTGGAGAGTGAATGGAAATCAAGATTTTAGCGGTCGTTACATATCACAATACCTTTGGGAATAAAAGGTGAGTCAGCGCATGCAGCAGAAAAAGATGTGTAGCACTAAGGGCTTTCGTTCTTTTTATTCACTGTCCAAAATATGTCTTCAGTTAAATGGTGCATGTAAGGAACATGGATTAACAGAGCCAGCAATGATTCTCTGTTATATGAGTTTGTACACAGTGAtggtatgtgtttgtttgtttgtttacacgCATGTATGTTCGTGTTATAAGGGGACATGACTAAACAAGTATGAAACTGACTCCCCGTTATGCGTTCGCCTGATGGCTTCAGCCAGGATCATAGAAATGTCAATCACCTGGAAAGCAAGAGAGAAACAAATTAGTCAACATGCTCTGATCaatgaggaaaaaagaaacCATTTCCGCCATCCAAAAAACGACCAAATCAGGTATAATAATCCAGAATTTAATACCAGTTTACTCTTCTAAAGTGTGGATTCAGCAACATAAATgggaaataattaaaattattttattcagcgagGATGCAATAAAATCCTTTTGAACtctattcatcaaaacattctgtaaaaaaagcaatgcatgaCCGTTTCCACTAAAATAGCAGTGACTCTGGAGAcagaagtaatggctgctgaaaattcagctttccatcacagtaataaattctGTATAGAAAAATAGTAATGTTGAATTATAATAGCATTTTACTATATACCTACTATATGTATCCTGGGCgagcttttgaacagtagtgtatatttatcaacaatttgttttttaaattttatcaaaagtttttaaattgtgaaacaTTAGTAGTCTTGATATCACTAATTTCCCCCTTCACTTTGATTCAGATTTAACAGCTTGATAATCAGTTctgattaacattttttatactatacaagagttaaaccaaaaaaatttcacatttcagttttcttaaaacaaataattattcagAAATTGTAATTTTCTGTGCCTGAATCTTGCTGCAGTGTTTGATTTTGTCCTCCTGTGGAATTGTGTTGGTGACCACAACCGCCTCAAAGTTGGCATTGTTGATCCGAGAAATGGCTGGCCCGGAGAAGATCCCATGAGTCAAGATGGCGTACACTTTAGTGGCTCCCGCAGACACCAATCTGAAAGAAACAGAGATACGCAAGcaattaaacaaacaagcagGAACATGAAGGCATGAAGTCTGACAAATCAGCAGGATAATCATGAATGTGCATCTGTTTGAGCATGAAAGCAGTTGCGTATCGAGTCTGTCCTCACTTGTCAGCCGCGTGACATATTGTCCCACACGTGTCTGCCATGTCATCCACTAAAATCGCCACTCGGTCCTTCACGTCCCCAACCAGCACCATACGATCCACTTCATTGGCCTTCTTACGTTCCTTATGGATTAGGGCAAAGTCCACATTCAGTCGGTCTGCGATGGATGTCactcaagcacACCTCTTGGCTCCACCGGCATCAGGAGAAACAATGGTGCAATTCTTCCATTCattgatgttttcttttatccATTTGAGGACTGCCGGCTCAGCATACAAGTTATCAACTGGGATGTCAAAGAACCCc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51957 lncRNA upstream 79239 11294707 ~ 11303431 (+) False gria3a
TU51940 lncRNA upstream 173265 11206316 ~ 11209405 (+) False G35274
TU51941 lncRNA upstream 174216 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA upstream 174216 11206316 ~ 11208454 (+) True G35274
TU51930 lncRNA upstream 194976 11187254 ~ 11187694 (+) True G35267
TU51998 lncRNA downstream 18432 11405528 ~ 11405761 (+) True G35309
TU52002 lncRNA downstream 26945 11414041 ~ 11414688 (+) True G35311
TU52017 lncRNA downstream 54443 11441539 ~ 11442411 (+) True G35322
TU52008 lncRNA downstream 76773 11463869 ~ 11465339 (+) True G35316
TU52055 lncRNA downstream 143422 11530518 ~ 11531244 (+) True G35350
XM_043238870.1 mRNA upstream 17730 11362066 ~ 11364940 (+) True iqcd
XM_043239527.1 mRNA upstream 52364 11324743 ~ 11330306 (+) False plp1b
XM_043239524.1 mRNA upstream 52364 11324756 ~ 11330306 (+) False plp1b
XM_043239525.1 mRNA upstream 52364 11325339 ~ 11330306 (+) True plp1b
XM_043239523.1 mRNA upstream 59807 11304365 ~ 11322863 (+) True nlgn3b
XM_043239808.1 mRNA downstream 13353 11400449 ~ 11403283 (+) True uprt
XM_043238441.1 mRNA downstream 80624 11467720 ~ 11471124 (+) True si:dkey-237j10.2
XM_043240208.1 mRNA downstream 86016 11473112 ~ 11512262 (+) True si:ch211-26b3.4
XM_043238164.1 mRNA downstream 127313 11514409 ~ 11518903 (+) True apool
XM_043240588.1 mRNA downstream 217731 11604827 ~ 11609386 (+) True zgc:113208
XR_006251083.1 other upstream 320356 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 449507 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 651618 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1264544 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1583312 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 537132 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 862042 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 862042 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1126980 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1316275 12703371 ~ 12705241 (+) False iscu

Expression Profile