RNA id: TU52002


Basic Information

Item Value
RNA id TU52002
length 352
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G35311
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11414041 ~ 11414688 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGCGTTTCTGTGTGTTTACTGGGCCATAGGTTTGGTTGGAAGAGGTACAGCTCGTTCAGCTGACTGTGCGTGAAGTGTCTCTGAATCTGCTGCTGGTCCAGGACACGAGATGACAGGGACTGCTTAGCAACTTGCCGCTCATAAATGTTCTGTTCCATGGTCCCCTAATCCCCCCCTGTGCCAGAAAACGGTACacatatacagtttttttttgcccaaagCGATAGACTCTGAAGATGCTCTGGATGTCATATGACGGATTCCAGCATGCGTCGAACACCACAACCCGGTTTGCAGCAACCAGATTGATTCCCAGAGACCCTGCACGAGTGGAGATCAGAAACAACCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51998 lncRNA upstream 8280 11405528 ~ 11405761 (+) True G35309
TU51993 lncRNA upstream 26871 11384891 ~ 11387170 (+) False G35304
TU51991 lncRNA upstream 26945 11382670 ~ 11387096 (+) True G35304
TU51992 lncRNA upstream 26945 11384891 ~ 11387096 (+) False G35304
TU51957 lncRNA upstream 110610 11294707 ~ 11303431 (+) False gria3a
TU52017 lncRNA downstream 26851 11441539 ~ 11442411 (+) True G35322
TU52008 lncRNA downstream 49181 11463869 ~ 11465339 (+) True G35316
TU52055 lncRNA downstream 115830 11530518 ~ 11531244 (+) True G35350
TU52095 lncRNA downstream 235569 11650257 ~ 11652683 (+) False glra4b
TU52094 lncRNA downstream 235940 11650628 ~ 11652683 (+) False glra4b
XM_043239808.1 mRNA upstream 10758 11400449 ~ 11403283 (+) True uprt
XM_043238870.1 mRNA upstream 49101 11362066 ~ 11364940 (+) True iqcd
XM_043239527.1 mRNA upstream 83735 11324743 ~ 11330306 (+) False plp1b
XM_043238441.1 mRNA downstream 53032 11467720 ~ 11471124 (+) True si:dkey-237j10.2
XM_043240208.1 mRNA downstream 58424 11473112 ~ 11512262 (+) True si:ch211-26b3.4
XM_043238164.1 mRNA downstream 99721 11514409 ~ 11518903 (+) True apool
XM_043240588.1 mRNA downstream 190139 11604827 ~ 11609386 (+) True zgc:113208
XM_043239833.1 mRNA downstream 195082 11609770 ~ 11614726 (+) True nono
XR_006251083.1 other upstream 351727 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 480878 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 682989 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1295915 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1614683 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 509540 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 834450 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 834450 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1099388 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1288683 12703371 ~ 12705241 (+) False iscu

Expression Profile