RNA id: TU52055


Basic Information

Item Value
RNA id TU52055
length 677
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G35350
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11530518 ~ 11531244 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

actattaaaattaaaaagcaatattgtATGATTATTTCTCAATAAATAAAGTAGCCCATTACATACATCAtcctaaataatagtaatatatttctggcACAATATCTAAatcaaacctttattttgatgggttgcCTTGAACACCTTAGaatttctgtgtgtatatgatATGATGCAAATTTTACTCAAATGAAACAGTGAAATGAATATGTtccatttagatatttttttttatttcctcCTTTAAatgcgattttctcaatatttagattttttttttgcaccctcagatttctAGAATTTCAGTTAGTTGCATCGTGGCCAAATATTGTTCTATATATACGTTGTGATATATATCTCAATTTCAAAACTGACCCTTATGTCTGGTTTTGTGGACCTGAGTCACATATGgttcagaaaagaaaatatgaatcaCAATTTAGTTTACCTGAAAGAACTGCTGAGTTTGTTGTAGTGGTAAACTTTGTGGGGCGGCTGATGGGTGAGGCGTATAGGCGGGCGTGGCCTGATGGGTGATGAAACTGTTATGTGGGATCATGATTGGTGAGGTGAAGACGGGGGAAGGGACAAGCACAGCGTTACAGTTCACCTGCTGCACAGGGAAGGAAGGAGCCATCATCTGCTGGTCCAGAGGATATCTGTAACACACAAACGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52008 lncRNA upstream 65179 11463869 ~ 11465339 (+) True G35316
TU52017 lncRNA upstream 88107 11441539 ~ 11442411 (+) True G35322
TU52002 lncRNA upstream 115830 11414041 ~ 11414688 (+) True G35311
TU51998 lncRNA upstream 124757 11405528 ~ 11405761 (+) True G35309
TU51993 lncRNA upstream 143348 11384891 ~ 11387170 (+) False G35304
TU52095 lncRNA downstream 119013 11650257 ~ 11652683 (+) False glra4b
TU52094 lncRNA downstream 119384 11650628 ~ 11652683 (+) False glra4b
TU52388 lncRNA downstream 175415 11706659 ~ 11706998 (+) True G35584
TU52389 lncRNA downstream 176287 11707531 ~ 11707773 (+) True G35585
TU52435 lncRNA downstream 197032 11728276 ~ 11728601 (+) True G35606
XM_043238164.1 mRNA upstream 11615 11514409 ~ 11518903 (+) True apool
XM_043240208.1 mRNA upstream 18256 11473112 ~ 11512262 (+) True si:ch211-26b3.4
XM_043238441.1 mRNA upstream 59394 11467720 ~ 11471124 (+) True si:dkey-237j10.2
XM_043239808.1 mRNA upstream 127235 11400449 ~ 11403283 (+) True uprt
XM_043238870.1 mRNA upstream 165578 11362066 ~ 11364940 (+) True iqcd
XM_043240588.1 mRNA downstream 73583 11604827 ~ 11609386 (+) True zgc:113208
XM_043239833.1 mRNA downstream 78526 11609770 ~ 11614726 (+) True nono
XM_043239834.1 mRNA downstream 78526 11609770 ~ 11614726 (+) False nono
XM_043239835.1 mRNA downstream 84348 11615592 ~ 11619068 (+) True casp22
XM_043239468.1 mRNA downstream 92145 11623389 ~ 11634450 (+) True aifm1
XR_006251083.1 other upstream 468204 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 597355 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 799466 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1412392 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1731160 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 392984 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 717894 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 717894 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 982832 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1172127 12703371 ~ 12705241 (+) False iscu

Expression Profile