RNA id: TU52098


Basic Information

Item Value
RNA id TU52098
length 2076
RNA type TUCP
GC content 0.50
exon number 2
gene id G35371
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10868364 ~ 10874064 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caaaataaGACTTTGTTAAATGGATAGCGCTGCCATCACAACATAGTACTCTTATTTGAATTCTTTTCCCCTTTCCACTTTCCATCCCCCACTTGCAGAGTCAGCTACAATAGAAAATATATCACATCTTTCCGTTTTATTCTTTGATCTGTACAAGTACAAAATAAACGCCAAATCATAAGAAACAAGGTAGCTGTTGACCGAGTCATGCTCATCTGTTCTCCAGTAAAGAAAATGAGTTGCACAGATCTAACGCATGAAAGAAAGTgatgttaaaagaaaacaattttatgTCTGAGAGACAATGTCATAGTCTGTTGTTGCAAACATTGCATTATTACAAAGTGTATGAAAGGAGCAACCATGTTCATACTGTGAAAATACTGCTCCTGTGTGAAAAGGATAATGAACGAATTTTGGCGGTAAATGTCccatagaaaacaaaaagtcaagcgctcaagtgaaaaataaatacacacttttggtaaactgaaaaaaaaaattgataaattgAGTTCCGGCATTCTCATCGGCTCTCCACCTTAAAGTTCATAAGGGTTCCCTAATATCCTAATTGAAATTTGGAGTGACCATTAATTAAGCAACAGTCATCCAAAGCAGATGAGATTTTATTCCTCATTGCGAATATAACTAtcccatgttttttttgcttcattctTTTTAGGGGAATCCTGCATGTTCCTGTGCTTTCCAGCGAGCTCATGCCAATATCTTTACACTGTCCAAAGTCTTTTAATCACTGGTACCCAAGAGCTGAAGCTGAGCCCAGTCTCTGGCCGTATAGAGCATAGGGAGAATAGTATTGCGCTGTGGCTGGGAGAGAGTGCATAGGAAGGGATGGAGCTCCTGGCAAGTGTGCCTTTCCGTAGGGATGATACCGTGCCAAACCTAGCCCTGGTGATCCACGCAGGGAGAGGGAACTGGGAAGAGCTCCTGGGCTGCTGGGAGGAGGCAGGTGGAGGTGGCAGGAAGCGGCAGAGGAGACAGATGCAGGGTAGCCAGAGAGCAGCTTCCCATCCACACCTGGCAGAGCTGTGTGTGTACGCAAATGGGCCAAGAGTTCCTCTGAGGTGGCGAAGCGTTTGTCACACGGGCCACCCACTGAGACCCAGTTACAGGCGTGAGGGAGCGTTTCATTGGGCAGCATGAAACCGTAAGTATACAGAGGATGGGACAGAGACGAGGTGGCGCTAGAGGACAGAGAACTAGGGTGGAGGGAGTGGAGGTGATGGGTGGGATACATAAGAGGGAAGCCTGTCTTTAGGGCAGATGATGGATCATGAACACAGGAAGAGCAGTTGCTGCCCCCGAGATGGGGTGCATTGGGGTAGGTGAGGCAGTACGGGTCCCTGCACAAACCCTGCATAAAAGAGGGAGGCGAGGCCCCTGTGAGAGGACTGGAGCTGGGATGTTTTCCTGGAACGCCCATCCCGGCACCAACTAAGCTAGATTTAGCGGGATCCAGCCCAGGCACAAACTGAGAAGGATAGCCAGTATATGCCCCGACAATGGAGCCGTGGTAGCCCATGGTGGAGGATGGGAGGGGAAACACAGAGTGGCCCGGTTTGAAGGGAGAAACTGGGGCGATGTGGCCCGCGCCCAGGCTGGGCTGAGGGGGTTGGGCGTCAGACTTGCTGTCAGGCTGAGGACTGCTGGAGGAGCTGGCACTGCTGGAGTTCGCGCTAGCACGTGCGTGACTGGAGTTGGCGATCTGTGCAATGTCCAGGCTTCCAGATTTGCTGTGCTCTGAATCTTTTTTCCCACTGCGCTCACCACCGCTACTGCTGTCGTTCCCTGGGTCGGCTTTGGAGTCCATGTGGGAGGTTTGTAGATGCGTTGGTTTCTGCGATACGGGAGACTGAGACTGCCGGTGCGTATGCGACTGTCCTGATGTCTGCTGAGAAGGAGAGCTGGCCCGTGGAGAGGGGGCATGGGGAGGTAAAGAGGGGCACGTCACAGCTGCAGAACCGCTATTTGGCACTCTGAACCCCGCTTTATCTGCCGAGCTGTTGATCCCAGCGCCATCCTTCCGGCATTCTGATCCAGTTTTAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51839 lncRNA downstream 30067 10838005 ~ 10838297 (-) True G35203
TU51837 lncRNA downstream 34769 10832858 ~ 10833595 (-) True G35201
TU51829 lncRNA downstream 77992 10766861 ~ 10790372 (-) True G35194
TU51823 lncRNA downstream 116460 10751335 ~ 10751904 (-) True G35189
TU51822 lncRNA downstream 117759 10750000 ~ 10750605 (-) True G35188
XR_006251094.1 lncRNA upstream 1584 10875648 ~ 10886738 (-) True LOC122346117
TU52118 lncRNA upstream 58286 10932350 ~ 10933745 (-) True G35385
TU52130 lncRNA upstream 64631 10938695 ~ 10939486 (-) True G35388
TU52135 lncRNA upstream 86247 10960311 ~ 10963602 (-) True slc25a15b
TU52137 lncRNA upstream 86247 10960311 ~ 10963602 (-) False slc25a15b
XM_043238725.1 mRNA downstream 107139 10753401 ~ 10761225 (-) True dgcr8
XM_043238727.1 mRNA downstream 119122 10738969 ~ 10749242 (-) True atp6v0a2b
XM_043239685.1 mRNA downstream 256822 10609022 ~ 10611542 (-) True rhbdd3
XM_043239824.1 mRNA downstream 334774 10531654 ~ 10533590 (-) False mrpl41
XM_043239822.1 mRNA downstream 335567 10531654 ~ 10532797 (-) False mrpl41
XM_043238338.1 mRNA upstream 13088 10887152 ~ 10889785 (-) True ctsll
XM_043238365.1 mRNA upstream 16778 10890842 ~ 10893594 (-) False LOC122344793
XM_043238364.1 mRNA upstream 16778 10890842 ~ 10893594 (-) True LOC122344793
XM_043240653.1 mRNA upstream 20088 10894152 ~ 10900274 (-) True zdhhc23a
XM_043239137.1 mRNA upstream 34834 10908898 ~ 10918493 (-) True atp6v1aa
TU51745 other downstream 406655 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 533022 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 1465741 9337828 ~ 9402623 (-) True G34789
TU51091 other downstream 1647857 9215508 ~ 9220507 (-) False vamp5
TU50964 other downstream 1938311 8929470 ~ 8930053 (-) True G34580
TU52116 other upstream 49863 10923927 ~ 10926163 (-) True G35384
TU52323 other upstream 545891 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 589767 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 709716 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 927250 11801314 ~ 11815810 (-) False msna

Expression Profile