RNA id: TU52118


Basic Information

Item Value
RNA id TU52118
length 1069
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G35385
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10932350 ~ 10933745 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctcagtttttattAGTACATCTTACAACAACGTATGCATCTCAAAAGATATAAAACAGTTTAATTTACagctgctctttttttcatcTCCATAGTTTTGCATCTTAACTCGCACAGATACATAACAACAGACAAACAATAttgaacaaacaaaactgcTCATATAGTGTCATGGTCCGTATTGACTCTCAGTAAATGAATGtcgcattacatttttaaaatgtctgcaAGTCTTCTCCCTCACCGGTCAATGTTATCACCTTTAACATACAAGTTACTGACATCAAGatcgtgaaaaataaaaaatataattgccaACAAAATGGCGGCACCTAAAGAACAGTTCACTGAGGTCAGCTCCCCCTCCCACTTCTAGAAAACAACTCCTCTTGTGTTTTGATCCGAGCAAACAAACAACTGGGCCGAACAGAGTATGGCATTCATCAAGTCAAAATACAAAGTCATTGAACGAAAAGAGGGTTAAAAACGTTTGCACGTTTCCCGCCTAAATGCTGTCTGGACTTGGAGCTTATATAGAAGTGTAAGATGTCACGGTCTCACAGAGACAGTTTACAGTGACACAGTTCTTTGTACATTTGTCTCCGTAGCTTGGGCATATCCTGCTGACCGAAGCTGAAAGGTTGTTCCAGGGCCAGGCACTTACAGTACTGGAGAACAACGATAAGAAGAGTGAACATGTATTTGGCAATGTGCTGTAAAACAAAGCGGCAGGCTAAGAAACGGTTCAAGGAGCGTAGCCATTAAAATAGCATCTTTACAACAAACGCTACCTACTTTTGGGCAACGTCGGTTGAGGGTCCTCTGGGAGTCGAAATACGTGATGCTACGCTGAggaacattcacacacactaatgACCAGTGCACTTCCAGATGAATAGGGATCAATAAGAACTTCTTCTGGAAAATATCAACCTAATGGGGAGATTTAACAGTGCAATAAACAAcagtgaaataaatgcagtgctACAATGATGATGCTGTAtctatggaagcctgtttccgtcactgaatgaaaaaaataaaaataaattaaagactGATGTGTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251094.1 lncRNA downstream 45612 10875648 ~ 10886738 (-) True LOC122346117
TU51839 lncRNA downstream 94053 10838005 ~ 10838297 (-) True G35203
TU51837 lncRNA downstream 98755 10832858 ~ 10833595 (-) True G35201
TU51829 lncRNA downstream 141978 10766861 ~ 10790372 (-) True G35194
TU51823 lncRNA downstream 180446 10751335 ~ 10751904 (-) True G35189
TU52130 lncRNA upstream 4950 10938695 ~ 10939486 (-) True G35388
TU52135 lncRNA upstream 26566 10960311 ~ 10963602 (-) True slc25a15b
TU52137 lncRNA upstream 26566 10960311 ~ 10963602 (-) False slc25a15b
TU52162 lncRNA upstream 104945 11038690 ~ 11039232 (-) True G35410
TU52175 lncRNA upstream 127193 11060938 ~ 11062888 (-) True G35422
XM_043239137.1 mRNA downstream 13857 10908898 ~ 10918493 (-) True atp6v1aa
XM_043239136.1 mRNA downstream 13949 10908898 ~ 10918401 (-) False atp6v1aa
XM_043240653.1 mRNA downstream 32076 10894152 ~ 10900274 (-) True zdhhc23a
XM_043238365.1 mRNA downstream 38756 10890842 ~ 10893594 (-) False LOC122344793
XM_043238364.1 mRNA downstream 38756 10890842 ~ 10893594 (-) True LOC122344793
XM_043238337.1 mRNA upstream 20025 10953770 ~ 10957971 (-) True mpdu1a
XM_043239666.1 mRNA upstream 29856 10963601 ~ 10969118 (-) False slc25a15b
XM_043239661.1 mRNA upstream 39468 10973213 ~ 10979926 (-) False si:ch211-114c12.2
XM_043239660.1 mRNA upstream 39468 10973213 ~ 10979926 (-) True si:ch211-114c12.2
XM_043239662.1 mRNA upstream 39468 10973213 ~ 10979920 (-) False si:ch211-114c12.2
TU52116 other downstream 6187 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 58286 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 470641 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 597008 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 1529727 9337828 ~ 9402623 (-) True G34789
TU52323 other upstream 486210 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 530086 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 650035 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 867569 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 1231665 12165410 ~ 12169327 (-) False sh2d1aa

Expression Profile