RNA id: TU52216


Basic Information

Item Value
RNA id TU52216
length 808
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G35450
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11249199 ~ 11250006 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GttggacaattttttttaatcaaatataaagacaaaaataataattctgaaatctAGTATtcttcaataaaatgtaaacaaaaattgtatttcttgAATTTTAGTAAAATGTGCAACTGCCGGTGACGGCAGCGCTGAAGATAAGGACGGTTTATTTCATatccaaatataaatgcaataaacataataaatgaaacaactGACATCTtgtaaatagaataaaaacatCTTGGTTTTTATGTACAGTccaatacattaaaatacatacactCACACGCTTTTGGAAATAAGAAGACATTGCAGGACCGgaaattaaaatcaaagtgGGACAAATGACCAACTATGtgtgaaacataaaaaagacGCTTCCTTTCTAATCCTGACCAAAAGCTCcatgcagaaatgtatttaccCGGCATAAAATCACCATGGTTACATTTACTAAGATTTCTCACCACAAAGACAATCATCATAATTCACTCTGATTAACAAGCCGTTCACGGTTTCAACTACCTAACTTCAAAAACAACCCACAACCTCAATGAACCACACAAAGGGGAAAGATTATAGAATTTTTCACAGTGGAGcttttccaaaatgaaaattttgatTCTCTCAGGACAGATGCAATGTGAATGAAACAGTAGGTTGGATaccaaacataaaacatttaagttaaatataaatcagcAATGAttcacattacattacacattttgtgtaaaacaaaataatacatatacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52278 lncRNA downstream 28308 11219968 ~ 11220891 (-) True G35499
TU52280 lncRNA downstream 35462 11212039 ~ 11213737 (-) True G35501
TU52251 lncRNA downstream 98427 11145973 ~ 11150772 (-) False G35479
TU52249 lncRNA downstream 98427 11148978 ~ 11150772 (-) False G35479
TU52254 lncRNA downstream 98427 11148978 ~ 11150772 (-) True G35479
TU52196 lncRNA upstream 54275 11304281 ~ 11330366 (-) False G35434
TU52305 lncRNA upstream 61543 11311549 ~ 11312830 (-) True G35522
TU52195 lncRNA upstream 74739 11324745 ~ 11330366 (-) True G35434
TU52399 lncRNA upstream 420951 11670957 ~ 11674817 (-) True G35592
TU52405 lncRNA upstream 442544 11692550 ~ 11694947 (-) True G35594
XM_043239781.1 mRNA downstream 39758 11204478 ~ 11209441 (-) False kat5a
XM_043239782.1 mRNA downstream 39759 11204478 ~ 11209440 (-) False kat5a
XM_043239780.1 mRNA downstream 39759 11204478 ~ 11209440 (-) True kat5a
XM_043238519.1 mRNA downstream 51995 11193469 ~ 11197204 (-) False gjb1a
XM_043238517.1 mRNA downstream 53360 11193469 ~ 11195839 (-) True gjb1a
XM_043238869.1 mRNA upstream 80983 11330989 ~ 11336101 (-) True si:dkey-125i10.3
XM_043238871.1 mRNA upstream 87860 11337866 ~ 11345096 (-) True agtr2
XM_043238873.1 mRNA upstream 87860 11337866 ~ 11345013 (-) False agtr2
XM_043238872.1 mRNA upstream 87860 11337866 ~ 11344998 (-) False agtr2
XM_043238868.1 mRNA upstream 98622 11348628 ~ 11361935 (-) False tpcn1
TU52116 other downstream 323036 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 375135 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 787490 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 913857 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 1846576 9337828 ~ 9402623 (-) True G34789
TU52323 other upstream 169949 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 213825 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 333774 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 551308 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 915404 12165410 ~ 12169327 (-) False sh2d1aa

Expression Profile