RNA id: XM_043239556.1


Basic Information

Item Value
RNA id XM_043239556.1
length 2599
RNA type mRNA
GC content 0.43
exon number 10
gene id msna
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11795656 ~ 11815944 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCCGAGCTGGAGTTTGCCATCCAACCCAGCACCACAGGGAAACAGTTATTTGACCAGAGTTCTAGAACAGCACAAGCTGAATAAGGAGCAATGGGAGGAAAGAATTCAAGTCTGGCACGAGGAGCACAAGGGCATGTTGAGAGAGGACTCGATGATGGAGTATCTGAAGATAGCTCAGGATCTGGAGATGTATGGCGTGAATTACTTCAGTATCAAGAATAAGAAAGGATCAGAGCTGTGGCTTGGTGTGGATGCCCTGGGACTCAACATCTACGAGCAGAATGACAAgatGACGCCTAAAATTGGTTTCCCTTGGAGTGAGatcagaaacatttctttcaatGATAAGAAATTTGTCATCAAACCCATTGATAAAAAGGCCCCGGACTTTGTGTTTTATGCCCAGCGCTTGCGCATTAATAAGAGGATTCTGGCTTTGTGCATGGGGAACCATGAGCTTTATATGAGACGCCGTAAACCAGACACCATCGAGGTCCAGCAGATGAAGGCACAAGCCAAGGAGGAGAAGAACCACAAGAAGATGGAAAGGGCCATGCTGGAGGATGAACGTAAGAAGAGAGAGCAGGCTgagaaggaaaaagagaagattgaaaaagaaaaagaggagctGATGGAGAGACTCAAAGTGATAGAGGAGCAGACAAGAAAAGCTCAGCAAGAGCTTGAGGAGCAGACCCGCAGGGCGATGGAGTTGGATCAGGAGCGTAAACGTGCTCACGAGGAGGCGGAGCGCCTGGAACGGGAGCGTCGTCTGGCAGAGGAGGCCAAAACGGCTCTGCTGCAGCAGTCTGAGAGCCAGATGAAGAACCAGGAGCATCTGgcAACTGAACTGGCAGAGTTGACTTCGAAGATCTCACTGCTTGAAGATgccaaaaagaagaaagaggaggaagCATCAGAGTGGCAAATTAAgGCCACTCAAGTGCAGGAGGACCTGGAGAAGACTAAAGAGGAGCTGAAGAACAAAGTCATGTCAGCCCATGTCCCAGAGCCTGTGCACGGTGAAAACGACAACGACGATGATGAGAGCAGCGCAGAGGCCTCGGCAGAACTCACCTCCGCAGCGGCTTATAAAGACAGGAGTGAGGAGGAGCGCATGACGGAGGCTGAGAAGAACGAACGGGTGCAGAAACATCTGCTGGCTCTTACTTCTGAGCTTGCTAATGCTCGTGACGAGACCAAGAAGACCCAGAACGACATCATCCATGCAGAGAATGTACGAGCAGGACGAGATAAATACAAGACGCTTCGTCAGATCCGCTCTGGAAACACCAAACAGCGAATCGACGAGTTTGAGTGCATGTAAATGTACCACAGTCAGCCAACAGGGGGAGCTACAGCCTGCCTTTTGCATCATTCCTGCAGAGGAACTACAgtacccacaatgcaccgctCCTACAGAAAATAAAGCCAAATATAGAATAATGCTGCACAATTCAAAAATCCCTTTAATTCAGGAGTGTTGTTCGGGTTACTGCATTATAATAAGGGagatttttgttgtgttttgacctagatgtagcttttttttattggaaaacaTTAACGGTTTGCTGATTAACTGGACTAAAGGGTTTGGATTTCAGTAAAACTGGGATTTCAGTAGGAAttgaagtatataaaaaaacattccagTGTTAGGATAGATTTTGAAAGCACTCCTGAGAGACATGTCAGTGTGCCAATTCCAATCAGTATAGTCGATTTATCAAATTGCACAGTGCCACTGTGATGGTGTAATAGCCTAGCTATTGCTATAACATTGTATCTATGTGCCTTTTCTAATAAAACAACTACAGTATAGATTAAAACTCCTGGCTATCTGCTCCCATCAACCACTCTGCCAGTACAGGCAACCCACAAGAgcaagtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgtgagatctcTGTTGATGATTCCTTTTTAGTTATAGTTTCTCACTGCTGCAGGTTTGTGGCTGCTCCCTGTTTGTGCCTTTTCACTGAAGAGAAAAtatcaaactgtatttttagtttagtttttaatacTATTCTTatttgaagctttttttttttttttaatgaagagacttttttttgaggcatttgaattatttcgcagtattattttaaagaatcctTTAATAGAATGACACCTTAAAAAGCATCTTCTGGGATTAaatttcttcctttttatttcTGAACAGTATTTACCCAGAGTGTACACAGTTTTGAATAGCCCTGCACTTGTAGGCAGTGCCTTAGttgttttgtattcatttttttttttttattcatgtggCAATATGCTGCACTGAAGCAATATGTCCCCAGTGGCTTTGGAAGAATTCTTTATTTGGATCTTACTCTTGGATACTTTCTAAACTGTTTtgatatacacaaacatggatTTCCtgattaaaatatgaagctTGTTTTTATCTCATACAGCGTTCTTGTTACCTGGGCGATTTCTCGCCTTGAGGGTgcaggtgtttttttctgtcaacaAATCAGAGAAGAAATTGctgcttaaaacattttcattgcaactgtcaataaaatataaaaaaaatcaccaa

Function

GO:

id name namespace
GO:0007492 endoderm development biological_process
GO:0072554 blood vessel lumenization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52495 lncRNA downstream 19543 11775805 ~ 11776113 (-) True G35660
XR_006250923.1 lncRNA downstream 21044 11769860 ~ 11774612 (-) True LOC122344709
TU52422 lncRNA downstream 91948 11701233 ~ 11703708 (-) True G35601
TU52417 lncRNA downstream 95990 11697948 ~ 11699666 (-) True G35599
TU52557 lncRNA upstream 61613 11866762 ~ 11871053 (-) True G35690
XR_006250983.1 lncRNA upstream 373902 12179051 ~ 12179750 (-) True LOC122345280
TU52704 lncRNA upstream 376338 12181487 ~ 12182979 (-) True G35797
TU52722 lncRNA upstream 421769 12226918 ~ 12248708 (-) True G35805
TU52721 lncRNA upstream 423433 12228582 ~ 12247509 (-) True G35804
XM_043238168.1 mRNA downstream 9513 11777612 ~ 11786143 (-) True fdx1b
XM_043240190.1 mRNA downstream 27642 11731519 ~ 11768014 (-) True arhgap20b
XM_043240189.1 mRNA downstream 27643 11731519 ~ 11768013 (-) False arhgap20b
XM_043240477.1 mRNA downstream 87940 11704231 ~ 11707716 (-) True LOC122345938
XM_043239992.1 mRNA downstream 105734 11682220 ~ 11689922 (-) True LOC122345659
XM_043238905.1 mRNA upstream 20118 11825267 ~ 11840042 (-) False zc3h12b
XM_043238904.1 mRNA upstream 20118 11825267 ~ 11840042 (-) False zc3h12b
XM_043238907.1 mRNA upstream 20118 11825267 ~ 11839984 (-) True zc3h12b
XM_043238906.1 mRNA upstream 20118 11825267 ~ 11836646 (-) False zc3h12b
XM_043240473.1 mRNA upstream 41978 11847127 ~ 11848955 (-) True shisa2a
TU52344 other downstream 143029 11583780 ~ 11652627 (-) True G35554
TU52323 other downstream 328534 11419955 ~ 11467122 (-) False hmgn7
TU52322 other downstream 328534 11463831 ~ 11467122 (-) True hmgn7
TU52116 other downstream 869493 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 921592 10868364 ~ 10874064 (-) True G35371
TU52701 other upstream 360261 12165410 ~ 12169327 (-) False sh2d1aa
TU52745 other upstream 512654 12317803 ~ 12319685 (-) True G35825
TU52956 other upstream 696765 12501914 ~ 12505958 (-) True G35936
TU53125 other upstream 1248695 13053844 ~ 13054857 (-) True G36047
unassigned_transcript_955 other upstream 1570480 13375629 ~ 13375700 (-) True trnap-agg_13

Expression Profile